Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0892
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    31   0.19 
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.8  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.1  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.3  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    26   5.3  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    25   9.3  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   9.3  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +2

Query: 242 PVPNCPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 406
           P+P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L
Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229

Query: 407 PNSCA 421
            +S A
Sbjct: 230 YSSDA 234


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 171 RRTDPSKGSASQH-LPPDRKRDPTEK 97
           R  DP K +AS   LPP+ KR  TEK
Sbjct: 436 RSFDPKKYTASMEILPPENKRQRTEK 461


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 355 PPFASWRNSEEARTDRPSQQLRSLN 429
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 615 SPRSLIVDSCSKLEQHSTLSRSILLI 538
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 140 RSIYHRIGNATQLRRSGEKLSGLSLWVKTRHKKTS 36
           R++YH          SG  +SG + W K +HKK++
Sbjct: 11  RALYH-FSRFRSFTTSGWIMSGHNKWSKIKHKKSA 44


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 607 FFNSGLLFQTGTTLNPISVYSFDL*GILPISAYG 506
           F NSG  F  G+ L   S Y++ L GI    A+G
Sbjct: 24  FHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFG 57


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 645 DRRFFAL*RWSPRSLIVDSCSK 580
           D +FF +  W P  L + SC K
Sbjct: 221 DAKFFGIFDWDPHGLCIYSCFK 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,155
Number of Sequences: 5004
Number of extensions: 53994
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)