BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0892 (646 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 1.4 11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 1.4 09_02_0036 + 3217163-3217584,3217752-3218322 30 1.4 12_01_0426 - 3356350-3356745,3357604-3357921 29 3.2 12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 28 5.5 04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717... 28 5.5 06_03_1144 - 27980216-27980896,27981682-27982048,27983499-279836... 28 7.3 06_01_0092 - 775290-775691 28 7.3 04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745... 27 9.7 04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 9.7 >11_06_0294 + 22022630-22024006,22024109-22024234,22024319-22024423, 22024525-22024659,22024798-22024847,22026487-22026545, 22026819-22026928,22027941-22028174,22028278-22028377, 22028699-22028829,22029834-22029914,22029970-22030128 Length = 888 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 334 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 477 L+R + PF SW N +A D+ + L LNG + + LK L Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446 >11_06_0278 - 21854859-21855101,21855529-21855587,21855684-21855711, 21855812-21856702,21856792-21857011,21857638-21857687, 21863174-21863284,21863379-21863483,21863568-21863693, 21863796-21865187 Length = 1074 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 334 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 477 L+R + PF SW N +A D+ + L LNG + + LK L Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451 >09_02_0036 + 3217163-3217584,3217752-3218322 Length = 330 Score = 30.3 bits (65), Expect = 1.4 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +2 Query: 272 ITIHWPSFYNVV-TGKTLALPNLIALQH 352 I+ W F N+V +G TL++PN + LQH Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96 >12_01_0426 - 3356350-3356745,3357604-3357921 Length = 237 Score = 29.1 bits (62), Expect = 3.2 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 262 SESYYNSLAVVLQRRDWEN 318 SESYY V +Q RDW N Sbjct: 203 SESYYFKFGVYMQHRDWSN 221 >12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 Length = 1054 Score = 28.3 bits (60), Expect = 5.5 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%) Frame = -3 Query: 197 ELTGLKPDDVGLILARAVLRSIYH---------RIGNATQLRRSGEKLSGL 72 +L+G+ P D G+ L R ++Y+ IGNAT+LRR + +GL Sbjct: 288 DLSGMLPPDFGITLPRIQFLNLYNCRLQGSIPPSIGNATKLRRIQLQSNGL 338 >04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201, 7178814-7178891 Length = 443 Score = 28.3 bits (60), Expect = 5.5 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 105 LGRVSDPVVDAAKHCPC*DQSYVVR 179 LG VSD + + CPC D++Y+V+ Sbjct: 247 LGVVSDQIAFISAACPCIDEAYLVQ 271 >06_03_1144 - 27980216-27980896,27981682-27982048,27983499-27983644, 27983872-27984111 Length = 477 Score = 27.9 bits (59), Expect = 7.3 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 272 YDSL*GNWVPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLR 138 + SL WVP P SR ELV + + GL+ AR +R Sbjct: 54 HHSLSPAWVPSPSSRHAHHARELVNRRVQVGRMEAGLVQARVSIR 98 >06_01_0092 - 775290-775691 Length = 133 Score = 27.9 bits (59), Expect = 7.3 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 392 RASSLLRQLAKGGCAARR 339 RA+SLLRQL + GCAA + Sbjct: 22 RAASLLRQLIEDGCAAAK 39 >04_03_0808 - 19872656-19873165,19873251-19873583,19874443-19874543, 19874628-19874853,19874941-19875079,19875339-19875451, 19875628-19875911,19876287-19876326 Length = 581 Score = 27.5 bits (58), Expect = 9.7 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -3 Query: 125 RIGNATQLRRSGEK-LSGLSLWVKTRHKKTS 36 R+G A + RR E L+G + W K RH+K S Sbjct: 61 RLGGARRARRLRELGLAGGASWAKRRHEKAS 91 >04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902, 4208006-4208297,4209278-4209569,4210013-4210465 Length = 783 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 284 WPSFYNVV-TGKTLALPNLIALQH 352 W F N+V +G TL+LP + LQH Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,088,786 Number of Sequences: 37544 Number of extensions: 388861 Number of successful extensions: 1098 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1078 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1098 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1596695220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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