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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0892
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   1.4  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   1.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.4  
12_01_0426 - 3356350-3356745,3357604-3357921                           29   3.2  
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160     28   5.5  
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717...    28   5.5  
06_03_1144 - 27980216-27980896,27981682-27982048,27983499-279836...    28   7.3  
06_01_0092 - 775290-775691                                             28   7.3  
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745...    27   9.7  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   9.7  

>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 334 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 477
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 334 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 477
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 272 ITIHWPSFYNVV-TGKTLALPNLIALQH 352
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 262 SESYYNSLAVVLQRRDWEN 318
           SESYY    V +Q RDW N
Sbjct: 203 SESYYFKFGVYMQHRDWSN 221


>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
 Frame = -3

Query: 197 ELTGLKPDDVGLILARAVLRSIYH---------RIGNATQLRRSGEKLSGL 72
           +L+G+ P D G+ L R    ++Y+          IGNAT+LRR   + +GL
Sbjct: 288 DLSGMLPPDFGITLPRIQFLNLYNCRLQGSIPPSIGNATKLRRIQLQSNGL 338


>04_01_0559 -
           7175828-7176195,7176262-7176973,7178028-7178201,
           7178814-7178891
          Length = 443

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 105 LGRVSDPVVDAAKHCPC*DQSYVVR 179
           LG VSD +   +  CPC D++Y+V+
Sbjct: 247 LGVVSDQIAFISAACPCIDEAYLVQ 271


>06_03_1144 -
           27980216-27980896,27981682-27982048,27983499-27983644,
           27983872-27984111
          Length = 477

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 272 YDSL*GNWVPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLR 138
           + SL   WVP P SR      ELV     +   + GL+ AR  +R
Sbjct: 54  HHSLSPAWVPSPSSRHAHHARELVNRRVQVGRMEAGLVQARVSIR 98


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 392 RASSLLRQLAKGGCAARR 339
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>04_03_0808 -
           19872656-19873165,19873251-19873583,19874443-19874543,
           19874628-19874853,19874941-19875079,19875339-19875451,
           19875628-19875911,19876287-19876326
          Length = 581

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 125 RIGNATQLRRSGEK-LSGLSLWVKTRHKKTS 36
           R+G A + RR  E  L+G + W K RH+K S
Sbjct: 61  RLGGARRARRLRELGLAGGASWAKRRHEKAS 91


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 284 WPSFYNVV-TGKTLALPNLIALQH 352
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,786
Number of Sequences: 37544
Number of extensions: 388861
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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