Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0892
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 1.4
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 1.4
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.4
12_01_0426 - 3356350-3356745,3357604-3357921 29 3.2
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 28 5.5
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717... 28 5.5
06_03_1144 - 27980216-27980896,27981682-27982048,27983499-279836... 28 7.3
06_01_0092 - 775290-775691 28 7.3
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745... 27 9.7
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 9.7
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 334 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 477
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 334 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 477
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 272 ITIHWPSFYNVV-TGKTLALPNLIALQH 352
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>12_01_0426 - 3356350-3356745,3357604-3357921
Length = 237
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 262 SESYYNSLAVVLQRRDWEN 318
SESYY V +Q RDW N
Sbjct: 203 SESYYFKFGVYMQHRDWSN 221
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Frame = -3
Query: 197 ELTGLKPDDVGLILARAVLRSIYH---------RIGNATQLRRSGEKLSGL 72
+L+G+ P D G+ L R ++Y+ IGNAT+LRR + +GL
Sbjct: 288 DLSGMLPPDFGITLPRIQFLNLYNCRLQGSIPPSIGNATKLRRIQLQSNGL 338
>04_01_0559 -
7175828-7176195,7176262-7176973,7178028-7178201,
7178814-7178891
Length = 443
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 105 LGRVSDPVVDAAKHCPC*DQSYVVR 179
LG VSD + + CPC D++Y+V+
Sbjct: 247 LGVVSDQIAFISAACPCIDEAYLVQ 271
>06_03_1144 -
27980216-27980896,27981682-27982048,27983499-27983644,
27983872-27984111
Length = 477
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 272 YDSL*GNWVPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLR 138
+ SL WVP P SR ELV + + GL+ AR +R
Sbjct: 54 HHSLSPAWVPSPSSRHAHHARELVNRRVQVGRMEAGLVQARVSIR 98
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 392 RASSLLRQLAKGGCAARR 339
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
>04_03_0808 -
19872656-19873165,19873251-19873583,19874443-19874543,
19874628-19874853,19874941-19875079,19875339-19875451,
19875628-19875911,19876287-19876326
Length = 581
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 125 RIGNATQLRRSGEK-LSGLSLWVKTRHKKTS 36
R+G A + RR E L+G + W K RH+K S
Sbjct: 61 RLGGARRARRLRELGLAGGASWAKRRHEKAS 91
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 284 WPSFYNVV-TGKTLALPNLIALQH 352
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,786
Number of Sequences: 37544
Number of extensions: 388861
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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