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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0892
         (646 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87448-1|BAA13389.1| 1550|Homo sapiens KIAA0259 protein.               31   4.6  
BC151237-1|AAI51238.1| 1435|Homo sapiens topoisomerase (DNA) II ...    31   4.6  
BC126209-1|AAI26210.2| 1435|Homo sapiens topoisomerase (DNA) II ...    31   4.6  
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     31   4.6  
AB019397-1|BAA34202.1| 1435|Homo sapiens DNA topoisomerase II bi...    31   4.6  

>D87448-1|BAA13389.1| 1550|Homo sapiens KIAA0259 protein.
          Length = 1550

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 248  VPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLRSIY 129
            +PG     +   T L  +L  LKPDD G+ +A A  +++Y
Sbjct: 1451 LPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVY 1490


>BC151237-1|AAI51238.1| 1435|Homo sapiens topoisomerase (DNA) II
            binding protein 1 protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 248  VPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLRSIY 129
            +PG     +   T L  +L  LKPDD G+ +A A  +++Y
Sbjct: 1336 LPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVY 1375


>BC126209-1|AAI26210.2| 1435|Homo sapiens topoisomerase (DNA) II
            binding protein 1 protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 248  VPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLRSIY 129
            +PG     +   T L  +L  LKPDD G+ +A A  +++Y
Sbjct: 1336 LPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVY 1375


>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 269  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPN 412
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+A PN
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPN 1797


>AB019397-1|BAA34202.1| 1435|Homo sapiens DNA topoisomerase II binding
            protein protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 248  VPGPPSRGYTRFTELVGELTGLKPDDVGLILARAVLRSIY 129
            +PG     +   T L  +L  LKPDD G+ +A A  +++Y
Sbjct: 1336 LPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVY 1375


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,003,573
Number of Sequences: 237096
Number of extensions: 2110241
Number of successful extensions: 12006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12006
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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