Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0892
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa...    29   3.5  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   6.1  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    27   8.1  
At1g27020.1 68414.m03294 expressed protein                             27   8.1  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   8.1  

>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
           family protein simlar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 585

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 162 DPS-KGSASQHLPPDRKRDPTEKIRRETQWT 73
           DPS +GS+S H P D  R P++  RR + ++
Sbjct: 211 DPSFRGSSSSHRPSDYSRRPSDYSRRPSDYS 241


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 257 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 421
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 603 LIVDSCSKLEQHSTLSRSILLIYKGFCRFRPMVKK*ADLTK 481
           L++  CSKL+   +L RS+L +  G C    M+K+  D++K
Sbjct: 833 LLLSDCSKLQSILSLPRSLLFLDVGKC---IMLKRTPDISK 870


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 310 WENPGVTQLNRLAAHPPFASW 372
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 539  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 634
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,192,905
Number of Sequences: 28952
Number of extensions: 295905
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)