Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0891
         (336 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   3.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   6.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   8.0  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 CLEPPDSRGSTVSISLPDSARLAS 227
           C  PPD  G+T+S S P+  R +S
Sbjct: 168 CRCPPDWEGTTLSQS-PNRRRASS 190


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 217 LAESGKDMLTVEPRESGGSKQCDFTS 140
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 258 MVASHHRPLGRVHEPN 305
           M A HH+  G  H P+
Sbjct: 347 MAAPHHQNFGPRHPPD 362


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,604
Number of Sequences: 336
Number of extensions: 1635
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)