Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0891
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    24   5.4  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   5.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   9.4  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.4  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 268 EATIRGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 155
           EA        A +AEA   E+ K+++  EP+++  +K+
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 84  LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 212
           L  P+G R  VS    + +++K+ C   P SRG TV    PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 165  PPDSRGSTVSISLPDSARLASALEAFRHNP 254
            P D +  T S     S+ L   L  F+H+P
Sbjct: 1010 PEDQKRKTFSFDTSKSSSLLKKLYRFKHDP 1039


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 195 ISLPDSARLASALEAFRHNP 254
           ++LP SA+L   ++A ++NP
Sbjct: 309 VALPQSAKLFQKVKALKNNP 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,174
Number of Sequences: 5004
Number of extensions: 25715
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)