Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0891
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.31
07_03_0846 - 21983581-21986055 29 0.71
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 29 0.93
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 29 1.2
07_03_0626 + 20060013-20060273,20061017-20061274 27 2.9
06_01_0957 - 7378608-7378662,7378828-7379012 27 2.9
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 2.9
09_04_0407 + 17345382-17345579,17345711-17346235 27 3.8
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 3.8
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 3.8
01_05_0118 + 18335065-18335553 27 3.8
06_01_0655 + 4742267-4742531,4743313-4744136 27 5.0
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 5.0
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 26 6.6
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204 26 6.6
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 26 6.6
02_02_0240 + 8196140-8198248,8198381-8198650 26 6.6
01_01_0785 - 6076089-6077615 26 6.6
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 26 8.7
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 223 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 89
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 81 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 230
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 29.1 bits (62), Expect = 0.93
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -3
Query: 310 RTFGSCTRPSGRWCEATIRGLCLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 143
R GS RP C A I+ L + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 142 SRV 134
R+
Sbjct: 146 RRL 148
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 39 GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 155
G V+ L + TDS++ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 211 RLGWLRP*RRSGIIP 255
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>06_01_0957 - 7378608-7378662,7378828-7379012
Length = 79
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 45 VMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 170
++ LR T +I +R P L R S R+ SH + PP
Sbjct: 14 LLDALRTTTAAIRVRAPAALSRAASEKIAVPRIAPSHAVPPP 55
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 204 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 100
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 275 VVRSYHPGIMPERL*GRSQPSRIRQGYAHCGAP 177
+ + YHP + +S S IR+ YAHC P
Sbjct: 4 LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 172 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 74
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 63 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 242
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 214 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 86
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 81 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 227
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 123 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 248
F + RL K HCLE P+S+ S+V +++ + A+ E H
Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 295 CTRPSGRWCEATIRGLCLNASKAEASLAESGKDMLTVEPRESGGSKQC 152
C SG + TI+G C++A AE SL + KD + R G +C
Sbjct: 952 CHGTSGAF-RKTIKGRCIHAFCAEESLPKD-KDTCAICHRNVGSCLKC 997
>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
Length = 306
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -1
Query: 177 ESREALNNVTLLVAFRIQNARRDVEAHLDHGDRCYRFFFLTRASRLRRSGYNSVRCR 7
++ EA+ + A A R A C A RLR +GYNS CR
Sbjct: 87 DAEEAMRQMRAAAAGACSCASRGAAAAAAGSGGCRSCTLRFLAERLRDAGYNSAICR 143
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 150 SHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVASHHRPLGRV 293
SH L + GSTVSI+LP + F N ++ H PL R+
Sbjct: 194 SHTLRHQITVGSTVSINLP------VVNQVFSSNRAIIIPHTSPLARI 235
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 252 PRMVASHHRPLGRVHEP 302
P VA+H RPLG +H P
Sbjct: 36 PPTVATHTRPLGIIHPP 52
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 204 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 97
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 232 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETRRRS 101
K+ AS A G D P R GG K+ S + SKR + R+
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERN 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,478
Number of Sequences: 37544
Number of extensions: 211225
Number of successful extensions: 669
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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