Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0891
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    29   1.2  
SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   2.9  
SB_19414| Best HMM Match : E-MAP-115 (HMM E-Value=3.6)                 27   5.0  
SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)                26   8.7  
SB_24049| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)             26   8.7  
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               26   8.7  
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)                      26   8.7  

>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 72  DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 176
           DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +3

Query: 48  MHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC-LEPPDSRGSTVSISLPDSARLA 224
           M ++  + + I     +GL     R +C  R   +     PP S     S ++ +   L 
Sbjct: 243 MRIIFSQVEYITALHSSGLGSLAERRDCLCRSFATKARTSPPLSYVFPRSDTISNGNSLR 302

Query: 225 SALEAFRHNPRMVASHHRPLGRVHEPNVR 311
           SA E   +NPR     ++  G V +P V+
Sbjct: 303 SAEETTANNPRRQRQQNKTQGNVGQPEVQ 331


>SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = +3

Query: 60  RKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEA 239
           R KT +++ R+   L R + RFE +   V +   +  ++ GS    SLP + +L  A+  
Sbjct: 55  RGKTVAMEQRELE-LERMIDRFEKQQSEVMNAAQKFEEATGSLPDPSLPVANQLELAVRK 113

Query: 240 FRHNPRMVASHHRPLGRVHE 299
            R + R++ S      R+ +
Sbjct: 114 IREHIRVIISTREENNRLRK 133


>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 271 CEATIRGLCLNASKAEASLAESGKDMLTVEPR-ESGGSKQC-DFTSRVSHSKRETRRRS 101
           C+A  + +CL   +A  + +E GK +    P  +SG + QC   T+  SH   E  + S
Sbjct: 10  CKAETKYICLICERAVCNRSEWGKPLAEETPNWKSGFAYQCWSCTTSSSHVDGENNKDS 68


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 93   PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 242
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_19414| Best HMM Match : E-MAP-115 (HMM E-Value=3.6)
          Length = 355

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 192 SISLPDSARLASALEAFRHNPRMVASHHRPLG-RVHE 299
           S+  PD+  +A ALEA R+N   +A    P+  RV E
Sbjct: 204 SLFEPDADAVAEALEALRNNQSNIAHSFDPINDRVEE 240


>SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 96  NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 218
           NG+R  +  + C  +     C  P +S    +SIS+    R
Sbjct: 39  NGIRHEMHSYSCPPKQKLHICTRPVESSAKYISISVTSRGR 79


>SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)
          Length = 275

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 187 VEPRESGGSKQCDFTSRVSHSKRETRRRSPFG 92
           +EP  +  S  C+F+SR+      T+RR PFG
Sbjct: 1   MEPAATPPSSSCEFSSRLL-----TKRRCPFG 27


>SB_24049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 114 VSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHN 251
           +S  EC++R VK  CL+       +V IS  D A + +  +   +N
Sbjct: 32  ISYAECDSRRVKVRCLDTNQCVKGSVVISNGDKAYVKACAKRCDYN 77


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +2

Query: 5    PRHRTELYPDLRSRDARVKKKNR*HRSP*SKWAS 106
            PRH  EL PD+R  D RV ++ R  R P SK A+
Sbjct: 1468 PRHPDELRPDIR-HDIRVAQERREGR-PDSKDAT 1499


>SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)
          Length = 259

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +3

Query: 84  LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMV 263
           L +P+GL+ + S      + +    ++  ++  +T +  L D   L   +  F HNP   
Sbjct: 70  LSEPSGLKEQNSEKVGAAKPLLKPAIQTTNAEDATETTKLQDICDLFEKIVDFNHNPTSE 129

Query: 264 ASHHR 278
           ++  R
Sbjct: 130 SAKRR 134


>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 232 KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 107
           K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 221 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 262


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 232  KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 107
            K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 1030 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 1071


>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
          Length = 649

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 232 KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 107
           K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 249 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,781
Number of Sequences: 59808
Number of extensions: 220637
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)