Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0890
         (262 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   1.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   3.8  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    20   5.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   5.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   5.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    19   8.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    19   8.8  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 108 DISASIPFRHHTITP 64
           D+   +PFR H  TP
Sbjct: 489 DVKIFLPFRFHIYTP 503


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 180 PLRELYPEKGATSGGIHS 233
           P  EL+P  G+T GG  S
Sbjct: 12  PDSELFPGFGSTCGGSSS 29


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 88  WNRRRYVG 111
           W RRRY G
Sbjct: 61  WTRRRYAG 68


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 161 PTGHPG 178
           PTGHPG
Sbjct: 116 PTGHPG 121


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 161 PTGHPG 178
           PTGHPG
Sbjct: 8   PTGHPG 13


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 201 PDTVRAKVPGCPVGRP 154
           P T R K PG   G P
Sbjct: 209 PRTRRVKKPGAKQGAP 224


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 67  CDSVVPKWNRRRYVGAACSTSAPRCRNRARTAYRASRNLC 186
           C     K+  +R      ST+A  CR+      R   N+C
Sbjct: 365 CSESNRKFYFKRARNGTFSTTANSCRSSTFRNNRDEYNVC 404


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,197
Number of Sequences: 336
Number of extensions: 1398
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4164927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)