BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0890 (262 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 26 0.95 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 24 3.8 SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 23 5.1 SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 23 5.1 SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 23 6.7 SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 23 6.7 >SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 25.8 bits (54), Expect = 0.95 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +3 Query: 120 LYLGSAVPQQSKDGLQGIQEPLRELYPEKGATSGGIHSWLSVW 248 L +G + ++ Q E L + YP K S GIH W S + Sbjct: 24 LSVGKLIVMGTRPTDQKYVEQLAKEYPGKVIPSFGIHPWFSYY 66 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 23.8 bits (49), Expect = 3.8 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = +3 Query: 141 PQQSKDGLQGIQEPLRELYPEK 206 P+ S +G+Q +QE ++E+ EK Sbjct: 349 PRPSDNGVQDLQEKMQEVNAEK 370 >SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 591 Score = 23.4 bits (48), Expect = 5.1 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +3 Query: 156 DGLQGIQEPLRELYPEKGATSGGIHS 233 DG+ GI + + G TSGG++S Sbjct: 440 DGVNGIDDLAYIVEDSMGGTSGGLYS 465 >SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 767 Score = 23.4 bits (48), Expect = 5.1 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +1 Query: 202 KRVRPVVAYIRGYRSG 249 KR+R +AY+ Y SG Sbjct: 75 KRIRKAIAYVNKYASG 90 >SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1142 Score = 23.0 bits (47), Expect = 6.7 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -2 Query: 237 ATNVCHHWSHPFP 199 A N+ HWS PFP Sbjct: 1026 ARNLSMHWSIPFP 1038 >SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 23.0 bits (47), Expect = 6.7 Identities = 8/31 (25%), Positives = 18/31 (58%) Frame = +2 Query: 5 HVPVQRTVAKLIVLNVIRCHGVIVWCRNGID 97 H+P++ AK ++ + + G + +CR +D Sbjct: 339 HIPLRLPRAKALLNTITQNFGTLPFCRRYLD 369 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,203,513 Number of Sequences: 5004 Number of extensions: 22203 Number of successful extensions: 53 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 53 length of database: 2,362,478 effective HSP length: 61 effective length of database: 2,057,234 effective search space used: 51430850 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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