Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0890
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   0.95 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   3.8  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    23   5.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    23   5.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    23   6.7  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    23   6.7  

>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 120 LYLGSAVPQQSKDGLQGIQEPLRELYPEKGATSGGIHSWLSVW 248
           L +G  +   ++   Q   E L + YP K   S GIH W S +
Sbjct: 24  LSVGKLIVMGTRPTDQKYVEQLAKEYPGKVIPSFGIHPWFSYY 66


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 141 PQQSKDGLQGIQEPLRELYPEK 206
           P+ S +G+Q +QE ++E+  EK
Sbjct: 349 PRPSDNGVQDLQEKMQEVNAEK 370


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 156 DGLQGIQEPLRELYPEKGATSGGIHS 233
           DG+ GI +    +    G TSGG++S
Sbjct: 440 DGVNGIDDLAYIVEDSMGGTSGGLYS 465


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 KRVRPVVAYIRGYRSG 249
           KR+R  +AY+  Y SG
Sbjct: 75  KRIRKAIAYVNKYASG 90


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 237  ATNVCHHWSHPFP 199
            A N+  HWS PFP
Sbjct: 1026 ARNLSMHWSIPFP 1038


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   HVPVQRTVAKLIVLNVIRCHGVIVWCRNGID 97
           H+P++   AK ++  + +  G + +CR  +D
Sbjct: 339 HIPLRLPRAKALLNTITQNFGTLPFCRRYLD 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,513
Number of Sequences: 5004
Number of extensions: 22203
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)