Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0890
(262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0173 - 17519768-17521285 30 0.22
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360... 30 0.29
07_03_0424 - 18060133-18061581 30 0.29
03_06_0106 - 31682200-31682775 29 0.51
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 29 0.68
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 28 0.90
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 28 0.90
01_06_0952 - 33310262-33310273,33310468-33311142 28 1.2
02_04_0033 + 19069801-19070142 27 1.6
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 27 2.1
11_06_0614 - 25530782-25531018,25532053-25532235 27 2.7
11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122 27 2.7
04_03_0875 - 20475201-20475415,20475682-20476247,20478253-20478269 27 2.7
10_08_0251 - 16188603-16188944 26 4.8
09_04_0201 + 15543318-15543488,15543956-15544069 26 4.8
03_05_0920 - 28812796-28813325,28814019-28816377 26 4.8
11_06_0359 - 22683236-22683484,22684069-22684263,22684450-226847... 25 6.3
10_08_0797 + 20646091-20646519,20646531-20647460 25 6.3
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 25 6.3
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 25 6.3
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 25 6.3
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 25 6.3
01_06_0771 - 31852796-31853092,31853407-31853793,31854001-318549... 25 6.3
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 25 6.3
11_04_0280 - 15726326-15726583,15727572-15727640,15727776-157278... 25 8.4
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 25 8.4
09_06_0136 - 21074420-21074746,21075905-21077026 25 8.4
09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303... 25 8.4
08_02_0787 - 21200762-21201142 25 8.4
06_03_0547 + 22001831-22002304 25 8.4
05_07_0065 + 27446138-27446296,27446736-27447138,27448144-274484... 25 8.4
04_04_0364 + 24726020-24726255,24726330-24726467,24727191-247276... 25 8.4
03_06_0601 + 34991912-34992352,34993719-34994516 25 8.4
02_05_1127 + 34292894-34293284,34293948-34295443 25 8.4
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 25 8.4
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 25 8.4
01_06_0334 - 28531499-28531810 25 8.4
01_03_0197 + 13700225-13700278,13701178-13702422 25 8.4
01_01_0709 - 5489623-5490360 25 8.4
>06_03_0173 - 17519768-17521285
Length = 505
Score = 30.3 bits (65), Expect = 0.22
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 CD-SVSWCDSVVPKWNRRRYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
CD S+ W S P W R V AA + S PR AR + ++VR +VA
Sbjct: 115 CDRSMIWLPSADPMWRTLRGVVAAHAFS-PRALAAARAVHE-----------RKVRDLVA 162
Query: 226 YIRGYRSGR 252
Y+RG R+GR
Sbjct: 163 YLRG-RAGR 170
>09_04_0388 +
17234485-17234583,17234710-17234893,17235252-17236057,
17236148-17236432
Length = 457
Score = 29.9 bits (64), Expect = 0.29
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 160 PSLLCCGTAEPR*STRHRHIGVDSISAPHYHTMTP 56
PS++CC + T HR G D +AP + P
Sbjct: 165 PSMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNP 199
>07_03_0424 - 18060133-18061581
Length = 482
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 89 GIDADMSVPRALPRLRGAATEQGRPTGHP 175
G D D ++ A PRLR A+ G P GHP
Sbjct: 47 GDDDDDALAAASPRLRYASIPDGLPDGHP 75
>03_06_0106 - 31682200-31682775
Length = 191
Score = 29.1 bits (62), Expect = 0.51
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = -2
Query: 222 HHWSHPFPDTVRAKVPGCPVGR-PCSVAAPRSRGRARGTDISASIPFRHHTITP*H 58
H P PD V GC GR A P S R R T S++ P T+T H
Sbjct: 79 HRLGKPPPDLQAGAVGGCADGRGNKGPAPPTSTSRGRATSHSSAPPRSCWTLTASH 134
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 37 NSVECDSVSWCDSVVP--KWNRRRYVGAACSTSAPRCRNRA 153
N ++ DS+ W + + P KW R+ G A +AP + A
Sbjct: 757 NVLKLDSLKWTEPLSPRAKWPSRQLPGTAAPAAAPHAQRSA 797
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 94 RRRYVGAACSTSAPRCRNRARTAYRASRNLCANCI 198
R R VGA + +A C A YR LCAN +
Sbjct: 344 RSRLVGATAAAAAAACYASASEFYRDMMLLCANAL 378
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 28.3 bits (60), Expect = 0.90
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 226 MPPLVAPFSGYSSRKGSWMPCRP 158
+PPL+ PF+ +R SW P P
Sbjct: 54 LPPLLVPFAAVPARSFSWYPRSP 76
>01_06_0952 - 33310262-33310273,33310468-33311142
Length = 228
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 82 PKWNRRRYVGAACSTSA-PRCRNRARTAYRASRNLC 186
P+W RR AA STS PR R R R R+SR LC
Sbjct: 76 PRWRRR---SAALSTSVFPRLR-RLRLLRRSSRVLC 107
>02_04_0033 + 19069801-19070142
Length = 113
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = -2
Query: 192 VRAKVPGCPVGR-----PCSVAAPRSRGRARGTDISASIPFR 82
+R + P+GR PC+ AA RGR RG +A+ P R
Sbjct: 10 LRREAAAQPLGRETLTSPCATAASGPRGRGRGEREAAAAPRR 51
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 2 PHVPVQRTVAKLIVLNVIRCHGVI 73
P PVQ V +L+ +++I C G++
Sbjct: 1134 PFHPVQSQVLRLVCISIINCSGIL 1157
>11_06_0614 - 25530782-25531018,25532053-25532235
Length = 139
Score = 26.6 bits (56), Expect = 2.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 209 CDQWWHTFVAIGLVERIL 262
C++WWH + IG+ L
Sbjct: 83 CEEWWHAALGIGIATAFL 100
>11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122
Length = 590
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 137 GAATEQGRPTGHPGTFARTVSGKGCDQWWHTFV 235
G TE P G+ T+ V+G+ WWH V
Sbjct: 102 GFVTECPIPPGNEHTYRFNVTGQVGTLWWHAHV 134
>04_03_0875 - 20475201-20475415,20475682-20476247,20478253-20478269
Length = 265
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 262 QDTFDQTDSH-ECMPPLVAPFSGYSSRKGSWMPCRPSLLCCGTAEPR*STRHR 107
QD +DS C P + S SS +W P R S G EP RHR
Sbjct: 115 QDKTSGSDSPPSCAPTRTSWASASSSPHRTWRPSRSSNGSGGGHEPSKEQRHR 167
>10_08_0251 - 16188603-16188944
Length = 113
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 125 PRLRGAATEQGRPTGHPGTFAR 190
PRLR A GRP+G P T R
Sbjct: 86 PRLRTPARGWGRPSGEPTTRGR 107
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 107 SVPRALPRLRGAATEQGRPTGHPGTFARTVSGKGCD 214
+ P LPR +G+++ RP G PG + K D
Sbjct: 3 ATPGRLPRPQGSSSAVPRPRGLPGVSVLLLPDKAMD 38
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 98 ADMSVPRALPRLRGAATEQGRPTGHPGTFARTVSGKGCD 214
+D + RA+ R GA G TG P + R +G CD
Sbjct: 39 SDAAAMRAVARALGADKALGWSTGDPCSSPRAWAGVTCD 77
>11_06_0359 -
22683236-22683484,22684069-22684263,22684450-22684734,
22686424-22686624,22688853-22689107,22689178-22689328,
22689466-22689535,22690176-22690434,22691333-22691461
Length = 597
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 56 RCHGVIVWCRNGIDADMSVPRALPRLRGAATEQGRPTGHPGTFARTV 196
R V VW + +DA + + L+G Q P G PG ARTV
Sbjct: 313 RLLSVTVWFADIVDA---LAFSYVDLKGKTKHQAGPWGGPGGSARTV 356
>10_08_0797 + 20646091-20646519,20646531-20647460
Length = 452
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -2
Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCP---VGRPCSVAAPRSRGRARGTDI 103
R ++ +VC W P+T R +P G ++ P SRG + D+
Sbjct: 27 RALSRSVCRSWRAAVPETPRLLLPAAAARGAGDEYALVFPLSRGWSVVVDV 77
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 5 HVPVQRTVAKLIVLNVIRCHGVIVWCRNGID 97
HVP++ AK +++ + G + +CR +D
Sbjct: 409 HVPLRAAKAKQLLVTINNNFGTLAFCRRYLD 439
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 25.4 bits (53), Expect = 6.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -2
Query: 207 PFPDTVRAKVPGCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTITP*HRITF---NTI 37
P D ++A PG V +V+ + R+RGTD + ++ H+ +TF NT
Sbjct: 1016 PIADALKA--PGARVCLFAAVSEIGAAVRSRGTDFTLTLRIVDHSRASAISVTFFADNTA 1073
Query: 36 SLATVRWTG 10
L VR +G
Sbjct: 1074 LLPCVRSSG 1082
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 156 PCSVAAPRSRGRARG 112
PC+ A+PR RG RG
Sbjct: 591 PCAAASPRDRGWGRG 605
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 213 SHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
S P PDT+ PG P +VAAPRS
Sbjct: 141 SSPTPDTI----PGSPPTPAAAVAAPRS 164
>01_06_0771 -
31852796-31853092,31853407-31853793,31854001-31854999,
31855084-31855238,31855694-31855784,31855866-31855969,
31856052-31856274,31856415-31856499,31856741-31857132,
31857963-31858130
Length = 966
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 136 RCRNRARTAYRASRNLCANCIRKRVR 213
R R R R +Y + N+C C KR+R
Sbjct: 883 RQRLRIRDSYITALNVCQACTLKRIR 908
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 115 RHRHIGVDSISAPHYHTMTPNHIQ 44
+HRH+G ++ SA + NH+Q
Sbjct: 1283 KHRHLGEENTSANKENRKLQNHVQ 1306
>11_04_0280 -
15726326-15726583,15727572-15727640,15727776-15727879,
15727997-15728070,15728307-15728314
Length = 170
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 150 SKDGLQGIQEPLRELYPEKGATSGG 224
S D LQG E L E+GA +GG
Sbjct: 126 SSDPLQGDDEETMRLRAERGARAGG 150
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 208 PFSGYSSRKGSWMPCRPSLLC-CGTAEPR 125
PF G+ R SW P LC G+A+ +
Sbjct: 216 PFEGHQVRSLSWSPTSDRFLCVTGSAQAK 244
>09_06_0136 - 21074420-21074746,21075905-21077026
Length = 482
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Frame = +1
Query: 58 VSWCDSVVPK-----WNRRRYVGAACSTSAPRCRNRARTAYRAS 174
VS C S V + WN R+V AC+ R A+ AS
Sbjct: 368 VSSCSSQVAERALYVWNNERFVAMACAAGPAAMEERILPAFVAS 411
>09_04_0465 +
17827224-17827997,17828711-17829024,17829949-17830397,
17830641-17830756
Length = 550
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 115 RHRHIGVDSISAPHYHTMTPNHIQHY 38
R RHI S+S PH +H H+
Sbjct: 23 RRRHIAAVSLSLPHTSLSLSSHHHHH 48
>08_02_0787 - 21200762-21201142
Length = 126
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +1
Query: 109 GAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPV 219
G + A C T S+NLCA C R + V
Sbjct: 13 GGGVPSCANCCGGVVATTTARSKNLCARCYRDHLNAV 49
>06_03_0547 + 22001831-22002304
Length = 157
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 168 PVGRPCSVAAPRSRGRARGTDISA--SIPFRHHTITP 64
PVGR S +PR RGR + ++A SIP + P
Sbjct: 116 PVGRWKSRRSPRRRGRTSASAVTARLSIPRTENPTMP 152
>05_07_0065 +
27446138-27446296,27446736-27447138,27448144-27448430,
27448550-27448810
Length = 369
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 140 AATEQGRPTGHPGTFARTVSGKGCDQWWHTFV 235
AA ++ T PG SG C W+ FV
Sbjct: 20 AAAQESCNTELPGVLVGNYSGLNCQPVWNNFV 51
>04_04_0364 +
24726020-24726255,24726330-24726467,24727191-24727657,
24727753-24728300
Length = 462
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 13 CPANRR*TNSVECDSVSWCDSVVPKWNRR-RYVGAACSTSAPRCRNRART 159
CP + T + C + W P+ RR + G CS +P CR+ RT
Sbjct: 6 CPRPQARTPNPLCAATPW-----PRAGRRANWRGIFCSRWSPSCRDAFRT 50
>03_06_0601 + 34991912-34992352,34993719-34994516
Length = 412
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 101 DMSVPRALPRLRGAATEQG 157
D+ VPRA+P +RGA G
Sbjct: 391 DVPVPRAVPAVRGAVRVDG 409
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Frame = -2
Query: 255 RSTRP--IATNVCHHWSHPFPD 196
R+ RP I + CHHW P D
Sbjct: 276 RAKRPDWIVVDFCHHWLPPIAD 297
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 52 DSVSWCDSVVPKWNRRRYV 108
DS W VPK NRR ++
Sbjct: 419 DSSQWLSRAVPKSNRREFI 437
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 198 DTVRAKVPGCPVGRPCSVAAPRSRGRARG 112
DT R K G+P R RGR RG
Sbjct: 83 DTPRVKAKKPTAGKPLGRGRGRGRGRGRG 111
>01_06_0334 - 28531499-28531810
Length = 103
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 100 RYVGAACSTSAPRC 141
R V AACS APRC
Sbjct: 90 RKVAAACSVPAPRC 103
>01_03_0197 + 13700225-13700278,13701178-13702422
Length = 432
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 243 PIATNVCHHWSHP-FPDTVRAKV 178
P +VCH W+H DT+R +V
Sbjct: 21 PTVLSVCHVWTHELIMDTMRKRV 43
>01_01_0709 - 5489623-5490360
Length = 245
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 76 VVPKWNRRRYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRV 210
+VP+ RRR VGA A R A R L + R+R+
Sbjct: 57 LVPRSRRRREVGARAGDGAETAAGRGDVAVGGQRWLDPSARRQRL 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,766,500
Number of Sequences: 37544
Number of extensions: 186669
Number of successful extensions: 780
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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