Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0890
(262 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.19
SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32) 29 0.59
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 28 1.0
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024) 28 1.0
SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_16210| Best HMM Match : PHD (HMM E-Value=0.076) 27 1.8
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51) 27 1.8
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7) 27 2.4
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 27 2.4
SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2) 27 2.4
SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85) 27 2.4
SB_11099| Best HMM Match : Fz (HMM E-Value=0.0017) 27 2.4
SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33) 27 3.2
SB_34249| Best HMM Match : fn3 (HMM E-Value=0) 27 3.2
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19) 26 4.2
SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 26 4.2
SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7) 26 4.2
SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8) 26 4.2
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0) 26 4.2
SB_3845| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.15) 26 4.2
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 26 4.2
SB_37509| Best HMM Match : PAE (HMM E-Value=0) 26 5.5
SB_10705| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 26 5.5
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029) 26 5.5
SB_38740| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 26 5.5
SB_26101| Best HMM Match : Protamine_P1 (HMM E-Value=9.9) 26 5.5
SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044) 26 5.5
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 25 7.3
SB_45899| Best HMM Match : Exo_endo_phos (HMM E-Value=0.011) 25 7.3
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09) 25 9.7
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 25 9.7
SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_14044| Best HMM Match : EGF_CA (HMM E-Value=4.1e-13) 25 9.7
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23) 25 9.7
SB_54587| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_41100| Best HMM Match : Homeobox (HMM E-Value=1.5e-24) 25 9.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 25 9.7
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 25 9.7
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 252 STRPIATNVCHHWSHPFPD--TVRAKVPGCPVGRPCSVAAPRSRGRARGTDISASIPFRH 79
S RP+ C + ++R ++ GC G C+ GR R + I+AS +
Sbjct: 6626 SIRPVTARYCRLRPRTWHGHISMRMELYGCSAGHLCNRKLGMKDGRIRNSAITASSEYNR 6685
Query: 78 HTITP*HRIT 49
HT R+T
Sbjct: 6686 HTPAHMARLT 6695
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 195 TVRAKVPGCPVGRPCSVAAPRSRGRARGTDISAS 94
++R + GC G C+ GR R T ISAS
Sbjct: 4050 SMRVEFYGCVTGPRCNRPLGMQNGRLRKTQISAS 4083
>SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)
Length = 375
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -1
Query: 238 SHECMPPLVAPFSGYSSRKGSWMPCRPSLLCCGTAEPR*STRHRHIGVDSISAPHYHTMT 59
+H C P V R+G ++ C +LCCG R R++ S S+ M+
Sbjct: 281 AHSCCNPFVYGSFARRFRRG-YLRCLTRILCCGKRSKEGKRRCRYLTTSSESSDRQTNMS 339
Query: 58 PNHI 47
+++
Sbjct: 340 GHNM 343
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -2
Query: 255 RSTRPIATNVCHHWSHPFPDTVRAKVP-GCPVGRPCSVAAP 136
R P + HH HPFP V +VP PV P V P
Sbjct: 198 RPCMPPPIIIHHHHHHPFPVRVPVRVPFRVPVRVPVPVRVP 238
>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
Length = 426
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 59 CHGVIVWCRNGIDADMSVPRALPRLRGAATEQGRP 163
CH IVW + G + S RLR TE G+P
Sbjct: 143 CHARIVWSKWGEWGECSAEGIKSRLRHCITELGQP 177
>SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 128 EVEHAAPTYRRRFHFGTTLSHHDTESHSTLLV 33
++E ++RRFH S H T+ H T+L+
Sbjct: 199 KIEQCFGLFKRRFHLMHVSSQHWTQKHKTVLM 230
>SB_16210| Best HMM Match : PHD (HMM E-Value=0.076)
Length = 280
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Frame = +1
Query: 40 SVECDSVSW-CDSVVPKWNRRRYVGAAC-STSAPRCRNRARTAYRASRN------LCANC 195
+V+C+ + CD V K N++RYV A C T+ RC + + + R+ C+NC
Sbjct: 85 AVKCNQKRFVCDKAV-KCNQKRYVCATCKDTTHARCASISGLNIKTFRSDSPRSWTCSNC 143
Query: 196 I 198
+
Sbjct: 144 L 144
>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
Length = 1275
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 67 CDSVVP---KWNRRRYVGAACSTSAPRCRNRARTAYRASR 177
C SV P WNR R+ +AC + RC +R+ A R+ R
Sbjct: 480 CISVFPLRSDWNRIRFSLSACRSGGLRCASRSH-AMRSMR 518
>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
Length = 1384
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 7 RTCPANRR*TNSVECDSVSWC--DSVVPKWNRRRYV 108
R P+ +R +V CDS++W D +V + RR V
Sbjct: 1062 RILPSQQRLAMNVTCDSITWLLQDEIVSELRHRRPV 1097
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 7 RTCPANRR*TNSVECDSVSWC--DSVVPKWNRRRYV 108
R P+ +R +V CDS++W D +V + RR V
Sbjct: 153 RILPSQQRLAMNVTCDSITWLLQDEIVSELRHRRPV 188
>SB_14210| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 712
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 VPVQRTVAKLIVLNVI-RCHGVIVWCRNGIDADMSVPRALPRL 133
VP +R+ +NV+ R G + WC + VP+ LP++
Sbjct: 31 VPFKRSAGLTQTVNVLTRDTGTLDWCLTNNPKCLQVPKQLPKI 73
>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
Length = 377
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 106 HIGVDSISAPHYHTMTPNHIQHY*FSDGSLDRY 8
H I PHYH + P++ Y + D D Y
Sbjct: 68 HYQTFHIDEPHYHVIEPHYHDDYHYYDHHYDDY 100
>SB_11099| Best HMM Match : Fz (HMM E-Value=0.0017)
Length = 234
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 118 CSTSAPRCRNRARTAYRASRNLCANCIRKRVRPV-VAYIRGYRSGRTYL 261
CS AP CR + + R +C+ +++ V + ++Y+ Y S T L
Sbjct: 86 CSMFAPYCRPQDSEPFLPCRRVCSEFLKRCVGDIDLSYLEYYVSSCTLL 134
>SB_2811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 VPVQRTVAKLIVLNVI-RCHGVIVWCRNGIDADMSVPRALPRL 133
VP +R+ +NV+ R G + WC + VP+ LP++
Sbjct: 72 VPFKRSAGLTQTVNVLTRDTGTLDWCLTNNPKCLQVPKQLPKI 114
>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
Length = 680
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 255 RSTRPIATNVCHHWSHPFPDTVRAKVPGCPV 163
+ + I T VCHHW FP + P P+
Sbjct: 305 KMSNSILTVVCHHWKICFPVVGEPQYPEGPL 335
>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
Length = 2195
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCS 148
RP +T+ H++ P D V A CP G C+
Sbjct: 276 RPKSTDDGVHYNSPVIDVVEAFCADCPSGMECN 308
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGC 169
+P ATN C H +P++ R C
Sbjct: 1824 KPSATNYCRHIPQQYPESTRGTTTQC 1849
>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
Length = 1828
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +3
Query: 138 VPQQSKDGLQGIQEPLRELYPEKGATSGGIHSWLSVW 248
+P+ ++ G + YP+KG G +W S W
Sbjct: 76 IPRTAQTNPDGSRIDTSVAYPQKGIIRGSTCTWKSTW 112
>SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 4 ARTCPANRR*TNSVECDSVSWCDSVVPKWNRRRYVGAAC 120
++ CP NRR T EC+ S C+ R RYV C
Sbjct: 512 SQICPHNRRKTRCRECNGGSICEH-----RRARYVCKDC 545
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 91 NRRRYVGAACSTSAPRCRNRARTAYRASR 177
N +R + A S APR R RAR RASR
Sbjct: 99 NAQRAMMAEDSLFAPRQRERARERQRASR 127
>SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)
Length = 185
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 4 ARTCPANRR*TNSVECDSVSWCDSVVPKWNRRRYVGAAC 120
++ CP NRR T EC+ S C+ R RYV C
Sbjct: 37 SQICPHNRRKTRCRECNGGSICEH-----RRARYVCKDC 70
>SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)
Length = 125
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 4 ARTCPANRR*TNSVECDSVSWCDSVVPKWNRRRYVGAAC 120
++ CP NRR T EC+ S C+ R RYV C
Sbjct: 43 SQICPHNRRKTRCRECNGGSICEH-----RRARYVCKDC 76
>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 535
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 94 RRRYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVV 222
R + V CS AP C ++ + R LC +RK PV+
Sbjct: 76 REQLVFFLCSAYAPMCTDKVDVVITSCRPLC-EYVRKSCLPVL 117
>SB_3845| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.15)
Length = 257
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 121 STRHRHIGVDSISAPHYHTMTPNHI 47
S H H+ VD + P+ +M P H+
Sbjct: 72 SMLHEHVCVDWVDTPYKGSMLPEHV 96
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 91 NRRRYVGAACSTSAPRCRNRARTAYRASRNLC 186
NR+R C PR + RAR RA R +C
Sbjct: 826 NRKRLY-EKCRQETPRTQGRARRGERAYRQVC 856
>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
Length = 483
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 134 RGAATEQGRPTGHPGTFARTVSGKGCDQW 220
+GA G P PG + R SGKG D W
Sbjct: 93 QGAVCLDGSP---PGYYYREGSGKGSDNW 118
>SB_10705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 118 TRHRHIGVDSISAPHYH 68
T HR+ G +I+APHY+
Sbjct: 15 TAHRYYGHPAITAPHYY 31
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 134 RGAATEQGRPTGHPGTFARTVSGKGCDQW 220
+GA G P PG + R SGKG D W
Sbjct: 862 QGAVCLDGSP---PGYYYREGSGKGSDNW 887
>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
Length = 476
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -1
Query: 112 HRHIGVDSISAPH----YHTMTPNHIQHY 38
+ H GV S PH YH + PN I+H+
Sbjct: 283 YAHHGVPSNDIPHFMYTYHGVPPNDIRHF 311
>SB_38740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 89 HFGTTLSHHDTESH 48
H GTT SHH T++H
Sbjct: 109 HEGTTTSHHATDAH 122
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 148 CCGTAEPR*STRHRHIGVDSISAPHYHTMTPNHI-QHY*FSDG 23
CCGTA R S+ R D +++ H T + QH ++G
Sbjct: 386 CCGTAIERGSSTDRGHSADRVASEACHPYTSGRVGQHLEQNEG 428
>SB_26101| Best HMM Match : Protamine_P1 (HMM E-Value=9.9)
Length = 132
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 79 PHYHTMTPNHIQHY*FSDGSLDR 11
PH T++PNH +H F +G++++
Sbjct: 94 PHTRTLSPNHEEHI-FFEGNINQ 115
>SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)
Length = 918
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 118 CSTSAPRCRNRARTAYRASRNLCANCIRKRVRPV-VAYIRGYRSGRTYL 261
CS AP CR + + R +C+ +++ V + Y+ Y S T L
Sbjct: 436 CSMFAPYCRPQDSEPFLPCRRVCSEFLKRCVGDIDFFYLEYYASSCTLL 484
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 118 TRHRHIGVDSISAPHYHTMTPNHIQH 41
TRH H D+ PH H P QH
Sbjct: 83 TRHGH-DTDTTRTPHGHDTDPTQTQH 107
>SB_45899| Best HMM Match : Exo_endo_phos (HMM E-Value=0.011)
Length = 707
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = +2
Query: 38 IVLNVIRCHGVIVWCRNGIDADMSVPRALPRLRGA-----ATEQGRPTGHPG 178
I+ + R G + WC PR LP++ G+ +Q PT PG
Sbjct: 271 IIKVLTRDTGTLDWCLTSNSKVPKEPRQLPKIGGSNHYGVLIQQAHPTQKPG 322
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/62 (20%), Positives = 21/62 (33%)
Frame = +1
Query: 10 TCPANRR*TNSVECDSVSWCDSVVPKWNRRRYVGAACSTSAPRCRNRARTAYRASRNLCA 189
TC R + CD CD+++P CS + N + + + C
Sbjct: 178 TCKRGRSDCKQIHCDLFFPCDNLLPASPNECCPKCECSHRGQKYANGKSWTNKPNEDTCF 237
Query: 190 NC 195
C
Sbjct: 238 QC 239
>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 121 STRHRHIGVDSISAPHYHTMTPNHIQHY*FS 29
S R H S HY T+T NHI HY F+
Sbjct: 112 SNRTFHYAFTSNHTFHY-TVTSNHIFHYAFT 141
>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
Length = 546
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 165 VGRPCSVAAPR--SRGRARGTDISASIPFRHHTITP 64
+GR A PR S A+ ++ +P R H++TP
Sbjct: 238 LGRDSEPATPRNLSTAPAKSSNTPRRVPSRSHSVTP 273
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 52 DSVSWCDSVVPKWNRR--RYVGAACSTSAPRCRNRARTAYRASRNLC 186
D + C+++ +++R+ + + C PR + RAR R R +C
Sbjct: 186 DIYTGCNTLKIEYSRKNKKRLYEKCRQETPRTQGRARRGVRVYRQVC 232
>SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 165 VGRPCSVAAPR--SRGRARGTDISASIPFRHHTITP 64
+GR A PR S A+ ++ +P R H++TP
Sbjct: 45 LGRDSEPATPRNLSTAPAKSSNTPRRVPSRSHSVTP 80
>SB_14044| Best HMM Match : EGF_CA (HMM E-Value=4.1e-13)
Length = 184
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 103 YVGAACSTSAPRCRNRARTAYRASRNLCANCI 198
Y G AC T C + + +R CAN I
Sbjct: 134 YTGIACETDIDECSSGSNNCHR-DHAFCANTI 164
>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
Length = 1084
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 196 IRKRVRPVVAYIRGYRSGRTY 258
IR+R R + +I GY+S TY
Sbjct: 915 IRRRERRITLFINGYKSKFTY 935
>SB_54587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 133 EPR*STRHRHIGVDSISAPHYHTMTPNHIQHY*FSDGSLDRYVR 2
EP HR I +DSIS H T Q D LD +VR
Sbjct: 73 EPIGRKSHRRISMDSISNFSLHRRTRASSQLTTIQDKELDFWVR 116
>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 32 KLIVLNVIRCHGVIVWCRNGIDADMSVPRALPRLRGAAT 148
++ V NV R H + W R+ + ALPR R A T
Sbjct: 562 RIHVANVKRSH--VAWSRSHVPIFYCARNALPRKRNALT 598
>SB_41100| Best HMM Match : Homeobox (HMM E-Value=1.5e-24)
Length = 103
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 127 SAPRCRNRARTAYRASRNL 183
S+ + R+RARTAY AS+ L
Sbjct: 13 SSAQVRSRARTAYTASQQL 31
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 118 CSTSAPRCRNRARTAYRASRNLCANCIRKR 207
C + CR R A A R C C+R++
Sbjct: 1877 CHNESKECRESLRKAKDAIRLRCLTCLREQ 1906
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 86 NGIDADMSVPRALPRLRGAATEQGRPTGHPGTFARTV 196
N DA P+A AT GRP G+ G ++ +V
Sbjct: 618 NRRDARACAPKAYTHQSRKATLPGRPAGYRGRWSSSV 654
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 252 STRPIATNVCHHWSHPFPDTV 190
S +PIA +CHH+ D V
Sbjct: 2296 SYQPIARKICHHFGDKLTDRV 2316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,830
Number of Sequences: 59808
Number of extensions: 208195
Number of successful extensions: 809
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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