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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0890
         (262 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    81   8e-17
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    81   8e-17
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    29   0.60 
Z32840-5|CAD88215.1|  509|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z32840-4|CAA83680.1|  460|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z32840-3|CAB63430.2|  457|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absent...    27   2.4  
U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane r...    27   2.4  
U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical ...    27   2.4  
AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell...    27   2.4  
AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell...    27   2.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    26   3.2  
AC006777-3|AAK72309.1|  345|Caenorhabditis elegans Hypothetical ...    26   3.2  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    26   3.2  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    26   4.2  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z93385-10|CAB07643.1|  702|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z48055-1|CAA88134.1|  544|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set (trithorax/...    25   7.4  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    25   7.4  
AL034393-23|CAH19089.1|  274|Caenorhabditis elegans Hypothetical...    25   7.4  
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U64835-2|AAO25998.1|  337|Caenorhabditis elegans Serpentine rece...    25   9.8  
U39647-7|AAP31441.1|  544|Caenorhabditis elegans Twik family of ...    25   9.8  
U39647-5|AAM51531.1|  576|Caenorhabditis elegans Twik family of ...    25   9.8  
U39647-4|AAM51532.1|  562|Caenorhabditis elegans Twik family of ...    25   9.8  
AF083651-1|AAC32862.1|  562|Caenorhabditis elegans putative pota...    25   9.8  
AF083648-1|AAC32859.1|  544|Caenorhabditis elegans putative pota...    25   9.8  
AF083647-1|AAC32858.1|  576|Caenorhabditis elegans putative pota...    25   9.8  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 35/53 (66%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
 Frame = +3

Query: 99  PICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYP-EKGATSGGIHSWLSVWSN 254
           P+CRCRVLY+GS+VP  +KDGLQGIQ+PL+E YP ++   + GI SWLSVWSN
Sbjct: 4   PLCRCRVLYIGSSVPTITKDGLQGIQQPLKERYPIQESPDTRGIDSWLSVWSN 56


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 81.4 bits (192), Expect = 8e-17
 Identities = 35/53 (66%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
 Frame = +3

Query: 99  PICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYP-EKGATSGGIHSWLSVWSN 254
           P+CRCRVLY+GS+VP  +KDGLQGIQ+PL+E YP ++   + GI SWLSVWSN
Sbjct: 4   PLCRCRVLYIGSSVPTITKDGLQGIQQPLKERYPIQESPDTRGIDSWLSVWSN 56


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 123 YLGSAVPQQSKDGLQGIQEPLRELYPEKGATS 218
           Y+  ++ QQ  DGLQG +EPL +++ +    S
Sbjct: 249 YVEDSLAQQYLDGLQGEEEPLAKIFVQSVVNS 280


>Z32840-5|CAD88215.1|  509|Caenorhabditis elegans Hypothetical
           protein C07G2.2c protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 174 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 70
           G PVGRP +    R RGR R T        R +TI
Sbjct: 363 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 397


>Z32840-4|CAA83680.1|  460|Caenorhabditis elegans Hypothetical
           protein C07G2.2b protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 174 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 70
           G PVGRP +    R RGR R T        R +TI
Sbjct: 314 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 348


>Z32840-3|CAB63430.2|  457|Caenorhabditis elegans Hypothetical
           protein C07G2.2a protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 174 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 70
           G PVGRP +    R RGR R T        R +TI
Sbjct: 314 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 348


>Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical
           protein F16H6.3 protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 109 GAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
           G  C TSA  CRN        +  L A C  +R R ++A
Sbjct: 108 GFCCKTSAYNCRNADFPRLNCATILPAQCRDQRWRTIIA 146


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 109 GAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
           G  C TSA  C N A  +   S+     C     RPV+A
Sbjct: 104 GYCCETSAYNCPNAALPSIDCSKVTPTQCKSPAWRPVIA 142


>Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical
           protein F09F3.5 protein.
          Length = 718

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97  RRYVGAACSTSAPRCRNRARTAYRASRNLCAN 192
           +R     CS+    C NR  T+ R+   LC N
Sbjct: 135 KRQANRRCSSPPINCNNRFHTSIRSITGLCNN 166


>U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absentia 
           protein homologue-1 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 229 CMPPLVAPFSGYSSRKGSWMPCRPSLLCCGTAE-PR*STRHRHIGVDSIS 83
           C+  ++ P+   SS       CRP L CC T   P  S   R++G++ I+
Sbjct: 93  CLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSV--RNLGLEKIA 140


>U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane
           receptor LIN-17 protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
           +P+    CH   H F  +V A  P CP+G P +V + +S
Sbjct: 66  KPLMKTKCHPHIHFFICSVFA--PMCPIGMPQAVTSCKS 102


>U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical
           protein C30B5.1 protein.
          Length = 706

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 94  RRRYVGAACSTSAPRCRNRARTAYRASRNLCANCI 198
           R RY G A    A RC  +    +R+ R +  NC+
Sbjct: 141 RTRYRGQAREYPAYRCNRKGCQTFRSIRKVFGNCM 175


>AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.2 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 229 CMPPLVAPFSGYSSRKGSWMPCRPSLLCCGTAE-PR*STRHRHIGVDSIS 83
           C+  ++ P+   SS       CRP L CC T   P  S   R++G++ I+
Sbjct: 159 CLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSV--RNLGLEKIA 206


>AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform b protein.
          Length = 556

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
           +P+    CH   H F  +V A  P CP+G P +V + +S
Sbjct: 66  KPLMKTKCHPHIHFFICSVFA--PMCPIGMPQAVTSCKS 102


>AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform a protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
           +P+    CH   H F  +V A  P CP+G P +V + +S
Sbjct: 66  KPLMKTKCHPHIHFFICSVFA--PMCPIGMPQAVTSCKS 102


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 37   NSVECDSVSWCDSVVPKWNRRRYVGAACSTSAPRCRNRART 159
            NS+ C+S+   D+  P WN  +  G  C+ +A  C N A T
Sbjct: 1347 NSI-CNSLELYDNCKPVWNDNQVTGCCCN-NANNC-NIANT 1384


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 37   NSVECDSVSWCDSVVPKWNRRRYVGAACSTSAPRCRNRART 159
            NS+ C+S+   D+  P WN  +  G  C+ +A  C N A T
Sbjct: 1347 NSI-CNSLELYDNCKPVWNDNQVTGCCCN-NANNC-NIANT 1384


>AC006777-3|AAK72309.1|  345|Caenorhabditis elegans Hypothetical
           protein Y46H3D.6 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 97  RRYVGAACSTSAPRCRNRARTAYRASRNLCANC 195
           RR V A    S+ RC    +   +  R LCA C
Sbjct: 35  RRKVAAGKPLSSSRCSGSCKLENQVLRRLCAKC 67


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 256  TFDQTDSHECMPPLVAPFSGYSSRKGSWMPCRPSL 152
            +FDQ  ++E   PL+ P    S  + S +P RP L
Sbjct: 2609 SFDQDVTYERSSPLLIPTPSSSFEQASTVPDRPPL 2643


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 166 CRPSLLCCGTAEPR*STRHRHIGVDSISAPHYHTMTPNHI 47
           CRP   C    EP    R +H+   S +AP   T+ P+ +
Sbjct: 722 CRP---CGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRV 758


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = +1

Query: 7   RTCPANRR*TNSV-----EC-DSVSWCDSVVPKW 90
           RTCP  R    S+     +C D V  CDSV  KW
Sbjct: 464 RTCPCGRNTLQSLGVTRKKCTDMVPTCDSVCDKW 497


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 166 CRPSLLCCGTAEPR*STRHRHIGVDSISAPHYHTMTPNHI 47
           CRP   C    EP    R +H+   S +AP   T+ P+ +
Sbjct: 722 CRP---CGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRV 758


>Z93385-10|CAB07643.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  GIDADMSVPRALPRLRGAATEQ 154
           G+  D  +PR  PR+  A TE+
Sbjct: 417 GLTQDQEIPRKAPRVESAETEE 438


>Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  GIDADMSVPRALPRLRGAATEQ 154
           G+  D  +PR  PR+  A TE+
Sbjct: 417 GLTQDQEIPRKAPRVESAETEE 438


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 186 AKVPGCPVGRPCSVAAPRSRGRARGTDISAS 94
           +K P  P   P S +A RSR R+RG   +AS
Sbjct: 72  SKTPKTPSKTPSSASA-RSRSRSRGRPTNAS 101


>Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.13 protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +1

Query: 100 RYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
           R  G  C TS   C N A           + C+    RP++A
Sbjct: 103 RTCGLCCQTSGYNCPNVAYPRLNCGTITASQCLSPVWRPIIA 144


>Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.10 protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +1

Query: 100 RYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
           R  G  C TS   C N A           + C+    RP++A
Sbjct: 103 RTCGLCCQTSGYNCPNVAYPRLNCGTITASQCLSPVWRPIIA 144


>Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical
           protein F35E8.9 protein.
          Length = 248

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 100 RYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
           R  G  C TSA  C N A      +    + CI    R ++A
Sbjct: 103 RTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPAWRTIIA 144


>Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical
           protein C47E12.11 protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 107 TYRRRFHFGTTLSH 66
           T R+RFH GTT  H
Sbjct: 129 TIRKRFHIGTTCPH 142


>Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical
           protein F08B12.2 protein.
          Length = 359

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 178 NLCANCIRKRVRPVVAYIRGY 240
           N C  C++KRV     ++ GY
Sbjct: 305 NKCPICLKKRVNDTALFVSGY 325


>Z48055-1|CAA88134.1|  544|Caenorhabditis elegans Hypothetical
           protein T07A5.3 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 113 PRALPRLRGAATEQGRPTGHPGTFARTVSGKGCDQW-WHTFVAIGL 247
           PR  P L G A   G   G  G    TV+ +  D W W   +A+ +
Sbjct: 414 PRYAPILMGIANGLGAVAGVGGMVTNTVTYQNPDGWKWVFLLAMAI 459


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 75  CGAEMESTPICRCRVLYLGSAVPQQSKDGLQGIQEPLR 188
           C    + +P+C+C+  ++G    ++   G  G++  LR
Sbjct: 419 CMHTSDHSPVCQCKNGFIGKRCEKECPIGFGGVRCDLR 456


>U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 12
           protein.
          Length = 389

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 150 SVAAPRSR-GRARGTDISASIPFRHHT 73
           ++  P+SR GR R TD++A +P    T
Sbjct: 282 TIPVPKSRRGRKRKTDVTAPVPLATKT 308


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 75  CGAEMESTPICRCRVLYLGSAVPQQSKDGLQGIQEPLR 188
           C    + +P+C+C+  ++G    ++   G  G++  LR
Sbjct: 419 CMHTSDHSPVCQCKNGFIGKRCEKECPIGFGGVRCDLR 456


>AL034393-23|CAH19089.1|  274|Caenorhabditis elegans Hypothetical
           protein Y18D10A.26 protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 104 YRRRFHFGTTLSHHDTESHS 45
           +R+R HFG    H +T  HS
Sbjct: 230 FRKRTHFGKLWKHVETSRHS 249


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 133 PRCRNRARTAYRASRNLCANCIRKRVRP 216
           PR R+R+R     S N CA  I+KR  P
Sbjct: 392 PRSRSRSRVVL--SENSCAEIIKKRNPP 417


>Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical
           protein F53C11.4 protein.
          Length = 527

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
 Frame = -1

Query: 103 IGVDSISAPHYHTMTPNHIQ-----HY*FSDGSLDRY 8
           IG+D   APH H    N  Q     H  F + SLD Y
Sbjct: 297 IGLDKSEAPHLHKFIQNITQAPLMVHTDFDNESLDCY 333


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 166 RASRNLCANCIRKRVRPVVAYIRGYRSGRTYL 261
           + S N+ +    KR+R V+ YIRG     +Y+
Sbjct: 332 KLSINVHSELRTKRIRNVIGYIRGSEEPDSYI 363


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 166 RASRNLCANCIRKRVRPVVAYIRGYRSGRTYL 261
           + S N+ +    KR+R V+ YIRG     +Y+
Sbjct: 332 KLSINVHSELRTKRIRNVIGYIRGSEEPDSYI 363


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 166 RASRNLCANCIRKRVRPVVAYIRGYRSGRTYL 261
           + S N+ +    KR+R V+ YIRG     +Y+
Sbjct: 351 KLSINVHSELRTKRIRNVIGYIRGSEEPDSYI 382


>U64835-2|AAO25998.1|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 29 protein.
          Length = 337

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 157 SLLCCGTAEPR*STRHRHIGVDSISAPHYH 68
           S LCC + + + STR   + V  I+  H H
Sbjct: 306 SSLCCCSKKTKSSTRTTKVSVQPITMVHSH 335


>U39647-7|AAP31441.1|  544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform e protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
           TA+PR S     IGV     P+YH   P
Sbjct: 34  TAQPRPSITSATIGVGDPFIPYYHYRKP 61


>U39647-5|AAM51531.1|  576|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform c protein.
          Length = 576

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
           TA+PR S     IGV     P+YH   P
Sbjct: 34  TAQPRPSITSATIGVGDPFIPYYHYRKP 61


>U39647-4|AAM51532.1|  562|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform d protein.
          Length = 562

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
           TA+PR S     IGV     P+YH   P
Sbjct: 34  TAQPRPSITSATIGVGDPFIPYYHYRKP 61


>AF083651-1|AAC32862.1|  562|Caenorhabditis elegans putative
           potassium channel subunitn2P17m2-1 protein.
          Length = 562

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
           TA+PR S     IGV     P+YH   P
Sbjct: 34  TAQPRPSITSATIGVGDPFIPYYHYRKP 61


>AF083648-1|AAC32859.1|  544|Caenorhabditis elegans putative
           potassium channel subunitn2P17m2-3 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
           TA+PR S     IGV     P+YH   P
Sbjct: 34  TAQPRPSITSATIGVGDPFIPYYHYRKP 61


>AF083647-1|AAC32858.1|  576|Caenorhabditis elegans putative
           potassium channel subunitn2P17m2-2 protein.
          Length = 576

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
           TA+PR S     IGV     P+YH   P
Sbjct: 34  TAQPRPSITSATIGVGDPFIPYYHYRKP 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,955,923
Number of Sequences: 27780
Number of extensions: 140768
Number of successful extensions: 521
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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