Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0890
(262 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 81 8e-17
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 81 8e-17
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 29 0.60
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z81056-3|CAB02910.1| 718|Caenorhabditis elegans Hypothetical pr... 27 2.4
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 27 2.4
U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane r... 27 2.4
U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical pr... 27 2.4
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 27 2.4
AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell... 27 2.4
AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell... 27 2.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 26 3.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 26 3.2
AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical ... 26 3.2
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 26 3.2
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 26 4.2
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 26 4.2
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 26 4.2
Z93385-10|CAB07643.1| 702|Caenorhabditis elegans Hypothetical p... 25 5.6
Z81114-7|CAB03290.1| 702|Caenorhabditis elegans Hypothetical pr... 25 5.6
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical p... 25 7.4
Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z68882-14|CAA93109.1| 366|Caenorhabditis elegans Hypothetical p... 25 7.4
Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z48055-1|CAA88134.1| 544|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 25 7.4
U37430-5|AAB52674.2| 389|Caenorhabditis elegans Set (trithorax/... 25 7.4
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 25 7.4
AL034393-23|CAH19089.1| 274|Caenorhabditis elegans Hypothetical... 25 7.4
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 25 7.4
Z79756-3|CAB02121.1| 527|Caenorhabditis elegans Hypothetical pr... 25 9.8
U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 25 9.8
U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 25 9.8
U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 25 9.8
U64835-2|AAO25998.1| 337|Caenorhabditis elegans Serpentine rece... 25 9.8
U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of ... 25 9.8
U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of ... 25 9.8
U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of ... 25 9.8
AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative pota... 25 9.8
AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative pota... 25 9.8
AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative pota... 25 9.8
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 81.4 bits (192), Expect = 8e-17
Identities = 35/53 (66%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Frame = +3
Query: 99 PICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYP-EKGATSGGIHSWLSVWSN 254
P+CRCRVLY+GS+VP +KDGLQGIQ+PL+E YP ++ + GI SWLSVWSN
Sbjct: 4 PLCRCRVLYIGSSVPTITKDGLQGIQQPLKERYPIQESPDTRGIDSWLSVWSN 56
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 81.4 bits (192), Expect = 8e-17
Identities = 35/53 (66%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Frame = +3
Query: 99 PICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYP-EKGATSGGIHSWLSVWSN 254
P+CRCRVLY+GS+VP +KDGLQGIQ+PL+E YP ++ + GI SWLSVWSN
Sbjct: 4 PLCRCRVLYIGSSVPTITKDGLQGIQQPLKERYPIQESPDTRGIDSWLSVWSN 56
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 123 YLGSAVPQQSKDGLQGIQEPLRELYPEKGATS 218
Y+ ++ QQ DGLQG +EPL +++ + S
Sbjct: 249 YVEDSLAQQYLDGLQGEEEPLAKIFVQSVVNS 280
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 174 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 70
G PVGRP + R RGR R T R +TI
Sbjct: 363 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 397
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 174 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 70
G PVGRP + R RGR R T R +TI
Sbjct: 314 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 348
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 174 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 70
G PVGRP + R RGR R T R +TI
Sbjct: 314 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 348
>Z81506-2|CAB04129.1| 257|Caenorhabditis elegans Hypothetical
protein F16H6.3 protein.
Length = 257
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 109 GAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
G C TSA CRN + L A C +R R ++A
Sbjct: 108 GFCCKTSAYNCRNADFPRLNCATILPAQCRDQRWRTIIA 146
>Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical
protein F35E8.6 protein.
Length = 272
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 109 GAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
G C TSA C N A + S+ C RPV+A
Sbjct: 104 GYCCETSAYNCPNAALPSIDCSKVTPTQCKSPAWRPVIA 142
>Z81056-3|CAB02910.1| 718|Caenorhabditis elegans Hypothetical
protein F09F3.5 protein.
Length = 718
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 97 RRYVGAACSTSAPRCRNRARTAYRASRNLCAN 192
+R CS+ C NR T+ R+ LC N
Sbjct: 135 KRQANRRCSSPPINCNNRFHTSIRSITGLCNN 166
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 229 CMPPLVAPFSGYSSRKGSWMPCRPSLLCCGTAE-PR*STRHRHIGVDSIS 83
C+ ++ P+ SS CRP L CC T P S R++G++ I+
Sbjct: 93 CLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSV--RNLGLEKIA 140
>U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane
receptor LIN-17 protein.
Length = 558
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
+P+ CH H F +V A P CP+G P +V + +S
Sbjct: 66 KPLMKTKCHPHIHFFICSVFA--PMCPIGMPQAVTSCKS 102
>U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical
protein C30B5.1 protein.
Length = 706
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 94 RRRYVGAACSTSAPRCRNRARTAYRASRNLCANCI 198
R RY G A A RC + +R+ R + NC+
Sbjct: 141 RTRYRGQAREYPAYRCNRKGCQTFRSIRKVFGNCM 175
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 229 CMPPLVAPFSGYSSRKGSWMPCRPSLLCCGTAE-PR*STRHRHIGVDSIS 83
C+ ++ P+ SS CRP L CC T P S R++G++ I+
Sbjct: 159 CLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSV--RNLGLEKIA 206
>AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform b protein.
Length = 556
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
+P+ CH H F +V A P CP+G P +V + +S
Sbjct: 66 KPLMKTKCHPHIHFFICSVFA--PMCPIGMPQAVTSCKS 102
>AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform a protein.
Length = 558
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 246 RPIATNVCHHWSHPFPDTVRAKVPGCPVGRPCSVAAPRS 130
+P+ CH H F +V A P CP+G P +V + +S
Sbjct: 66 KPLMKTKCHPHIHFFICSVFA--PMCPIGMPQAVTSCKS 102
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 37 NSVECDSVSWCDSVVPKWNRRRYVGAACSTSAPRCRNRART 159
NS+ C+S+ D+ P WN + G C+ +A C N A T
Sbjct: 1347 NSI-CNSLELYDNCKPVWNDNQVTGCCCN-NANNC-NIANT 1384
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 37 NSVECDSVSWCDSVVPKWNRRRYVGAACSTSAPRCRNRART 159
NS+ C+S+ D+ P WN + G C+ +A C N A T
Sbjct: 1347 NSI-CNSLELYDNCKPVWNDNQVTGCCCN-NANNC-NIANT 1384
>AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical
protein Y46H3D.6 protein.
Length = 345
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 97 RRYVGAACSTSAPRCRNRARTAYRASRNLCANC 195
RR V A S+ RC + + R LCA C
Sbjct: 35 RRKVAAGKPLSSSRCSGSCKLENQVLRRLCAKC 67
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 256 TFDQTDSHECMPPLVAPFSGYSSRKGSWMPCRPSL 152
+FDQ ++E PL+ P S + S +P RP L
Sbjct: 2609 SFDQDVTYERSSPLLIPTPSSSFEQASTVPDRPPL 2643
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 166 CRPSLLCCGTAEPR*STRHRHIGVDSISAPHYHTMTPNHI 47
CRP C EP R +H+ S +AP T+ P+ +
Sbjct: 722 CRP---CGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRV 758
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Frame = +1
Query: 7 RTCPANRR*TNSV-----EC-DSVSWCDSVVPKW 90
RTCP R S+ +C D V CDSV KW
Sbjct: 464 RTCPCGRNTLQSLGVTRKKCTDMVPTCDSVCDKW 497
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 166 CRPSLLCCGTAEPR*STRHRHIGVDSISAPHYHTMTPNHI 47
CRP C EP R +H+ S +AP T+ P+ +
Sbjct: 722 CRP---CGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRV 758
>Z93385-10|CAB07643.1| 702|Caenorhabditis elegans Hypothetical
protein M01E5.6 protein.
Length = 702
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 89 GIDADMSVPRALPRLRGAATEQ 154
G+ D +PR PR+ A TE+
Sbjct: 417 GLTQDQEIPRKAPRVESAETEE 438
>Z81114-7|CAB03290.1| 702|Caenorhabditis elegans Hypothetical
protein M01E5.6 protein.
Length = 702
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 89 GIDADMSVPRALPRLRGAATEQ 154
G+ D +PR PR+ A TE+
Sbjct: 417 GLTQDQEIPRKAPRVESAETEE 438
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 186 AKVPGCPVGRPCSVAAPRSRGRARGTDISAS 94
+K P P P S +A RSR R+RG +AS
Sbjct: 72 SKTPKTPSKTPSSASA-RSRSRSRGRPTNAS 101
>Z81529-11|CAB04297.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.13 protein.
Length = 249
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = +1
Query: 100 RYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
R G C TS C N A + C+ RP++A
Sbjct: 103 RTCGLCCQTSGYNCPNVAYPRLNCGTITASQCLSPVWRPIIA 144
>Z81529-8|CAB04291.1| 249|Caenorhabditis elegans Hypothetical
protein F35E8.10 protein.
Length = 249
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = +1
Query: 100 RYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
R G C TS C N A + C+ RP++A
Sbjct: 103 RTCGLCCQTSGYNCPNVAYPRLNCGTITASQCLSPVWRPIIA 144
>Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical
protein F35E8.9 protein.
Length = 248
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 100 RYVGAACSTSAPRCRNRARTAYRASRNLCANCIRKRVRPVVA 225
R G C TSA C N A + + CI R ++A
Sbjct: 103 RTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPAWRTIIA 144
>Z68882-14|CAA93109.1| 366|Caenorhabditis elegans Hypothetical
protein C47E12.11 protein.
Length = 366
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 107 TYRRRFHFGTTLSH 66
T R+RFH GTT H
Sbjct: 129 TIRKRFHIGTTCPH 142
>Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical
protein F08B12.2 protein.
Length = 359
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 178 NLCANCIRKRVRPVVAYIRGY 240
N C C++KRV ++ GY
Sbjct: 305 NKCPICLKKRVNDTALFVSGY 325
>Z48055-1|CAA88134.1| 544|Caenorhabditis elegans Hypothetical
protein T07A5.3 protein.
Length = 544
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 PRALPRLRGAATEQGRPTGHPGTFARTVSGKGCDQW-WHTFVAIGL 247
PR P L G A G G G TV+ + D W W +A+ +
Sbjct: 414 PRYAPILMGIANGLGAVAGVGGMVTNTVTYQNPDGWKWVFLLAMAI 459
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 75 CGAEMESTPICRCRVLYLGSAVPQQSKDGLQGIQEPLR 188
C + +P+C+C+ ++G ++ G G++ LR
Sbjct: 419 CMHTSDHSPVCQCKNGFIGKRCEKECPIGFGGVRCDLR 456
>U37430-5|AAB52674.2| 389|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 12
protein.
Length = 389
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 150 SVAAPRSR-GRARGTDISASIPFRHHT 73
++ P+SR GR R TD++A +P T
Sbjct: 282 TIPVPKSRRGRKRKTDVTAPVPLATKT 308
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 75 CGAEMESTPICRCRVLYLGSAVPQQSKDGLQGIQEPLR 188
C + +P+C+C+ ++G ++ G G++ LR
Sbjct: 419 CMHTSDHSPVCQCKNGFIGKRCEKECPIGFGGVRCDLR 456
>AL034393-23|CAH19089.1| 274|Caenorhabditis elegans Hypothetical
protein Y18D10A.26 protein.
Length = 274
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 104 YRRRFHFGTTLSHHDTESHS 45
+R+R HFG H +T HS
Sbjct: 230 FRKRTHFGKLWKHVETSRHS 249
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 133 PRCRNRARTAYRASRNLCANCIRKRVRP 216
PR R+R+R S N CA I+KR P
Sbjct: 392 PRSRSRSRVVL--SENSCAEIIKKRNPP 417
>Z79756-3|CAB02121.1| 527|Caenorhabditis elegans Hypothetical
protein F53C11.4 protein.
Length = 527
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Frame = -1
Query: 103 IGVDSISAPHYHTMTPNHIQ-----HY*FSDGSLDRY 8
IG+D APH H N Q H F + SLD Y
Sbjct: 297 IGLDKSEAPHLHKFIQNITQAPLMVHTDFDNESLDCY 333
>U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical
protein R57.1b protein.
Length = 576
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 166 RASRNLCANCIRKRVRPVVAYIRGYRSGRTYL 261
+ S N+ + KR+R V+ YIRG +Y+
Sbjct: 332 KLSINVHSELRTKRIRNVIGYIRGSEEPDSYI 363
>U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical
protein R57.1c protein.
Length = 751
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 166 RASRNLCANCIRKRVRPVVAYIRGYRSGRTYL 261
+ S N+ + KR+R V+ YIRG +Y+
Sbjct: 332 KLSINVHSELRTKRIRNVIGYIRGSEEPDSYI 363
>U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical
protein R57.1a protein.
Length = 770
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 166 RASRNLCANCIRKRVRPVVAYIRGYRSGRTYL 261
+ S N+ + KR+R V+ YIRG +Y+
Sbjct: 351 KLSINVHSELRTKRIRNVIGYIRGSEEPDSYI 382
>U64835-2|AAO25998.1| 337|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 29 protein.
Length = 337
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 157 SLLCCGTAEPR*STRHRHIGVDSISAPHYH 68
S LCC + + + STR + V I+ H H
Sbjct: 306 SSLCCCSKKTKSSTRTTKVSVQPITMVHSH 335
>U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform e protein.
Length = 544
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
TA+PR S IGV P+YH P
Sbjct: 34 TAQPRPSITSATIGVGDPFIPYYHYRKP 61
>U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform c protein.
Length = 576
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
TA+PR S IGV P+YH P
Sbjct: 34 TAQPRPSITSATIGVGDPFIPYYHYRKP 61
>U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform d protein.
Length = 562
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
TA+PR S IGV P+YH P
Sbjct: 34 TAQPRPSITSATIGVGDPFIPYYHYRKP 61
>AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-1 protein.
Length = 562
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
TA+PR S IGV P+YH P
Sbjct: 34 TAQPRPSITSATIGVGDPFIPYYHYRKP 61
>AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-3 protein.
Length = 544
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
TA+PR S IGV P+YH P
Sbjct: 34 TAQPRPSITSATIGVGDPFIPYYHYRKP 61
>AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-2 protein.
Length = 576
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 139 TAEPR*STRHRHIGVDSISAPHYHTMTP 56
TA+PR S IGV P+YH P
Sbjct: 34 TAQPRPSITSATIGVGDPFIPYYHYRKP 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,955,923
Number of Sequences: 27780
Number of extensions: 140768
Number of successful extensions: 521
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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