Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0890
         (262 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 97  VDSISAPHYHTMTPNH 50
           V S   PH+HTM   H
Sbjct: 408 VYSTPGPHHHTMGHGH 423


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 217 LVAPFSGYSSRKGSWMPCRPSLLC 146
           LV PF+ Y    GSW    P  +C
Sbjct: 238 LVMPFAVYVLVNGSW--SLPGFVC 259


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 29  AKLIVLNVIRCHGVIVWCR 85
           AKL   N  RC G I W +
Sbjct: 116 AKLAWRNATRCIGRIQWSK 134


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = -2

Query: 231 NVCHHWSH 208
           N  HHW H
Sbjct: 468 NTLHHWHH 475


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 207  PFPDTVRAKVPGCPVGRPCSVAAPRSRG 124
            P P    +   G PVG P + +A    G
Sbjct: 1749 PHPGNGHSGTMGPPVGHPTNASAHSRSG 1776


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 216  WSHPFPDTVRAKVPGCPVG 160
            WS P P+     + G  VG
Sbjct: 1027 WSPPLPELRHGDIQGFNVG 1045


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 216  WSHPFPDTVRAKVPGCPVG 160
            WS P P+     + G  VG
Sbjct: 1023 WSPPLPELRHGDIQGFNVG 1041


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,309
Number of Sequences: 438
Number of extensions: 1516
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)