Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0890
(262 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing... 28 0.74
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t... 27 2.3
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr... 27 2.3
At3g28330.1 68416.m03539 F-box family protein-related contains T... 27 2.3
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR... 26 3.0
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 25 5.2
At3g43790.3 68416.m04680 transporter-related low similarity to S... 25 5.2
At3g43790.2 68416.m04679 transporter-related low similarity to S... 25 5.2
At3g43790.1 68416.m04678 transporter-related low similarity to S... 25 5.2
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 25 5.2
At2g44270.1 68415.m05509 expressed protein contains Pfam profil... 25 5.2
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 25 6.9
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 25 6.9
At1g75100.1 68414.m08722 expressed protein low similarity to SP|... 25 6.9
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg... 25 6.9
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg... 25 6.9
At1g65710.1 68414.m07458 expressed protein ; expression supporte... 25 6.9
At1g19350.5 68414.m02408 brassinosteroid signalling positive reg... 25 6.9
At1g19350.4 68414.m02407 brassinosteroid signalling positive reg... 25 6.9
At1g19350.3 68414.m02405 brassinosteroid signalling positive reg... 25 6.9
At1g19350.1 68414.m02406 brassinosteroid signalling positive reg... 25 6.9
At4g27030.1 68417.m03887 expressed protein 25 9.1
At4g11640.1 68417.m01861 serine racemase, putative similar to se... 25 9.1
At3g50650.1 68416.m05540 scarecrow-like transcription factor 7 (... 25 9.1
>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
protein similar to SP|O00623 Peroxisome assembly protein
12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
{Homo sapiens}; contains Pfam profile PF04757: Pex2 /
Pex12 amino terminal region
Length = 393
Score = 28.3 bits (60), Expect = 0.74
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 175 RNLCANCIRKRVRPVVAYIRGY 240
R+LCA C++KR P V + G+
Sbjct: 336 RSLCALCLQKRANPSVVTVSGF 357
>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
A. thaliana CHP-rich proteins
Length = 658
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 91 SISAPHYHTMTPNHIQHY*FSD 26
SIS PH H PNH +Y SD
Sbjct: 479 SISEPHIHPSHPNHPLYYFPSD 500
>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 370
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/59 (28%), Positives = 22/59 (37%)
Frame = +2
Query: 59 CHGVIVWCRNGIDADMSVPRALPRLRGAATEQGRPTGHPGTFARTVSGKGCDQWWHTFV 235
C GV+VWC D L L T G T + A + G+ WW + V
Sbjct: 248 CEGVLVWCEPEEDRGWCPVDGLEGLPNRPTSPGYLT----SVAHSDRGRRVTVWWESAV 302
>At3g28330.1 68416.m03539 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 349
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 237 ATNVCHHWSHPFPDTVRA 184
A+ V W HPFP TVR+
Sbjct: 331 ASFVLPQWMHPFPSTVRS 348
>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1167
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 73 SVVPKWNRRRYVG-AACST--SAPRCRNRART 159
+++P WN R+VG A C+ S P C+ + +
Sbjct: 970 NLLPHWNENRFVGIALCAVVGSLPNCQEQTNS 1001
>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 893
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 177 PGCPVGRPCSVAAPRSRGRARGTDISASI 91
P P GRP V P S+G +G ISA +
Sbjct: 658 PTTPSGRPLPVVLPASKG--QGLQISAQL 684
>At3g43790.3 68416.m04680 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 120 LYLGSAVPQQSKDGLQGIQEPLRELYPEKGATSGGI-HSW 236
+ L AVPQ + GI ++ G GG+ SW
Sbjct: 399 IMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGGVLFSW 438
>At3g43790.2 68416.m04679 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 120 LYLGSAVPQQSKDGLQGIQEPLRELYPEKGATSGGI-HSW 236
+ L AVPQ + GI ++ G GG+ SW
Sbjct: 399 IMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGGVLFSW 438
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 120 LYLGSAVPQQSKDGLQGIQEPLRELYPEKGATSGGI-HSW 236
+ L AVPQ + GI ++ G GG+ SW
Sbjct: 399 IMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGGVLFSW 438
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -2
Query: 213 SHPFPDTVRAKVPGCPVGRPCSVAAPRSRGRARGTDISASIPFRHH 76
SH VP RP + PR R T+ + S+ FR H
Sbjct: 2 SHEIVPVDPIDVPSTSYSRP--ILGPREDSPERATEFTRSLTFREH 45
>At2g44270.1 68415.m05509 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 358
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 77 WCRNGIDADMSVPRALPRL-----RGAATEQGRPTGHPGTFARTVSGKGC 211
WC+ + + + R LP++ RG + + T PG+ A+++ K C
Sbjct: 305 WCKACVLLE-GLNRGLPKMGIGRPRGVNGDHNKETKKPGSVAKSIESKQC 353
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 75 CGAEMESTPICRCRVLYLGS 134
C ME++P CRC ++G+
Sbjct: 424 CEPGMEASPTCRCAYPFMGT 443
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 25.0 bits (52), Expect = 6.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 240 IATNVCHHWSHPFP 199
+ TN+CH + HP P
Sbjct: 102 VHTNICHFYGHPNP 115
>At1g75100.1 68414.m08722 expressed protein low similarity to
SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
sapiens}
Length = 651
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 81 AEMESTPICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYPEKGATSG 221
+ ++S+PI SA P+ KDG++G +++ KGA+ G
Sbjct: 383 SSLDSSPIPDKSSFASSSAAPEVGKDGVKGKVSDFVKIF-SKGASVG 428
>At1g75080.2 68414.m08720 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 116 AAPTYRRRFHFGTTLSHHDTESHSTL 39
A+PT+R +FH T+ D ST+
Sbjct: 223 ASPTHRHQFHTPATIPECDESDSSTV 248
>At1g75080.1 68414.m08719 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 116 AAPTYRRRFHFGTTLSHHDTESHSTL 39
A+PT+R +FH T+ D ST+
Sbjct: 223 ASPTHRHQFHTPATIPECDESDSSTV 248
>At1g65710.1 68414.m07458 expressed protein ; expression supported
by MPSS
Length = 455
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 143 RHRGAEVEHAAPTYRRR 93
RHRG E H +P RRR
Sbjct: 154 RHRGVERVHGSPRERRR 170
>At1g19350.5 68414.m02408 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 116 AAPTYRRRFHFGTTLSHHDTESHSTL 39
A+PT+ R+FH T+ D ST+
Sbjct: 222 ASPTHHRQFHAPATIPECDESDSSTV 247
>At1g19350.4 68414.m02407 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 116 AAPTYRRRFHFGTTLSHHDTESHSTL 39
A+PT+ R+FH T+ D ST+
Sbjct: 222 ASPTHHRQFHAPATIPECDESDSSTV 247
>At1g19350.3 68414.m02405 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 357
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 116 AAPTYRRRFHFGTTLSHHDTESHSTL 39
A+PT+ R+FH T+ D ST+
Sbjct: 244 ASPTHHRQFHAPATIPECDESDSSTV 269
>At1g19350.1 68414.m02406 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 116 AAPTYRRRFHFGTTLSHHDTESHSTL 39
A+PT+ R+FH T+ D ST+
Sbjct: 222 ASPTHHRQFHAPATIPECDESDSSTV 247
>At4g27030.1 68417.m03887 expressed protein
Length = 323
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 241 DSHECMPPLVAPFSGY 194
DSH C+ P +A ++GY
Sbjct: 122 DSHLCLEPALAGYAGY 137
>At4g11640.1 68417.m01861 serine racemase, putative similar to
serine racemase [Mus musculus] GI:6448865; contains Pfam
profile PF00291: Pyridoxal-phosphate dependent enzyme
Length = 346
Score = 24.6 bits (51), Expect = 9.1
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 5 HVPVQRTVAKLIVLNVIRCHGVIVWCRNGIDADMSVPRALPRLRGAATEQGRPTGHPGTF 184
++ V + K V NVIR G ++W +A MS + E G HP
Sbjct: 118 YIVVPKGAPKCKVDNVIRYGGKVIWS----EATMSSREEI--ASKVLQETGSVLIHPYND 171
Query: 185 ARTVSGKG 208
R +SG+G
Sbjct: 172 GRIISGQG 179
>At3g50650.1 68416.m05540 scarecrow-like transcription factor 7
(SCL7)
Length = 542
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 122 EHAAPTYRRRFHFGTTLSHHDTESHST 42
E P R ++F LSH +TES S+
Sbjct: 204 ESGDPIQRVGYYFAEALSHKETESPSS 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,594,258
Number of Sequences: 28952
Number of extensions: 128735
Number of successful extensions: 407
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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