Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0889
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.37
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.37
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 0.86
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 28 1.1
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.5
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.5
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 1.5
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.6
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.6
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 2.6
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 26 3.5
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.6
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 4.6
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 4.6
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 25 6.1
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 25 6.1
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.0
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 8.0
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.5 bits (63), Expect = 0.37
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -2
Query: 568 LFDERTAKIQGSQITSQTNIFKDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKT 389
L D K+Q Q +FKD L +++++ ++ A TL E K GL+ +K
Sbjct: 345 LSDSNNQKVQDDQQQQLEELFKD-LDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKR 403
Query: 388 GQLKEPKTGKLVD 350
+ K G L D
Sbjct: 404 LEESSKKGGILAD 416
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 29.5 bits (63), Expect = 0.37
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 135 FNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFL 257
F + + Y L L+N N+TW ++VLLWL Q L
Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQAL 143
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 0.86
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = +3
Query: 105 YFSIFHFW-FYF-NITLNYFFRLC 170
YFS+F F+ F F ++ N+FFRLC
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.9 bits (59), Expect = 1.1
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -1
Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81
EK+ + K ++ S + D ++K+T+ KK E K KD + S K S
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKK-------KEHKKKDKESSSKKRKSG 218
Query: 80 PSISEDPKKDVSKEKLKTEITPTEKK 3
S E+ KK K K K E T + +K
Sbjct: 219 SSDKEEKKKKKIKLKDKPESTSSVEK 244
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 203 VSADKATVDKVTEPKKVIQ-RNIEVEPKVKDAKVSVKDI--PSRPSISEDPKKDVSKEKL 33
V K V++PK+ + + EP+VK S + PS+ ++ +K+ + +
Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQP 484
Query: 32 KTEITPTEK 6
K E TP EK
Sbjct: 485 KREKTPVEK 493
Score = 26.6 bits (56), Expect = 2.6
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDK-VTEPKKVIQRNIEVEPKVKDAKVSVKDIPS 84
E K P KV EEPS+ D ++ VT+PK+ K K K S
Sbjct: 452 EVKPTTPSASKV-EEPSKKRDEDNHQKEETVTQPKR---------EKTPVEKSFPKPASS 501
Query: 83 RPSISEDPKKDVSKEKLKTEITPTEKK 3
+ SED KK+ S+EK K E++ K
Sbjct: 502 PVTFSEDVKKEPSEEK-KLEVSDEAPK 527
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 131 EPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPT 12
+P D K +PS E+ D+ K+KT I P+
Sbjct: 238 QPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIKPS 277
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 200 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKT 27
++ K D+ + P + Q+ +EV + KD+K + ++ E PKK K KT
Sbjct: 273 ASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKT 330
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 126 WFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFL 257
WF++ +T+ +FF+ S +S L W H+FL
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFL 313
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 194 DKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51
DK + KKV Q+N E+E K D K+S ++P + +++ KD
Sbjct: 21 DKKSQSLEEHEKKVQQKNEELEKKAAD-KISRDELPEK-QLAQSNDKD 66
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 505 KDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKTGQ-LKEP 371
K ALA I +S +Y+V A+ +T K+ D+ G LK+P
Sbjct: 264 KVALASCYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKP 309
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 217 NQVELCPLIKRLLTRLQS 164
N+V+LCPL++ +TR+ S
Sbjct: 319 NRVQLCPLVRSTVTRILS 336
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 336 AAFFISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGS 479
++ F+S + S P +SP T++ + LAASTL I SGS
Sbjct: 154 SSIFLSNWSTIFSSNASPTDSQLSPTHTST--IAELAASTLSIFPSGS 199
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 4.6
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -1
Query: 248 MQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKV-SVKDI-PSRPS 75
+QP Q + +PS V + V P + +Q +P V +VK P++PS
Sbjct: 393 IQPVQSTQYYQPSSPVQPVQNGVP--APPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQPS 450
Query: 74 ISEDPKKDVSKEKLKTEITPT 12
+ + K+ V + + +ITPT
Sbjct: 451 LEDAAKRRVEEMLRQMDITPT 471
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -1
Query: 167 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 60
EP+K ++ + K + V+V+++P+ P +DP
Sbjct: 305 EPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDP 340
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 217 NQVELCPLIKRLLTRL 170
NQVELC +I R+LT +
Sbjct: 395 NQVELCKIIHRMLTEV 410
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 568 LFDERTA-KIQGSQITSQTNIFKDALAKKIIDPESVIYNVEAAKPVTLQEAVKIG 407
LF + TA I I+ +I K + I PE+++ + KP++ + ++K+G
Sbjct: 121 LFTKETAFNILLQIISGIEHIHKHGFMHRDIKPENILVKRISPKPISSRYSIKLG 175
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/37 (27%), Positives = 26/37 (70%)
Frame = +3
Query: 420 ASCKVTGLAASTLYITDSGSIIFLARASLKILVCEVI 530
A+ + L A++ ++TD+ +IFL R+++ +L+ +++
Sbjct: 98 AASGIIHLGATSCFVTDNADLIFL-RSAMDLLIPKLV 133
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 242 VASISFHRLSSLYYCHTSEYRSCDHSD*PNFCS 340
+AS S++ +S YCH S C D C+
Sbjct: 57 IASTSYYNISEGTYCHVSGSNLCVSPDVIAICA 89
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = -1
Query: 200 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51
+A K V+ + P + P+V S+ +P +I E+P +D
Sbjct: 273 TAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSED 322
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = -1
Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVK 96
K +DKV EP+ + +R ++++ ++ D V+++
Sbjct: 45 KCQLDKVAEPQGLSKRIMDLQGRIYDLNVTME 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,092
Number of Sequences: 5004
Number of extensions: 36398
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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