BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0889 (578 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.37 SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.37 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 0.86 SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 28 1.1 SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.5 SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.5 SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 1.5 SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.6 SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.6 SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 2.6 SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 26 3.5 SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.6 SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.6 SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 4.6 SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 4.6 SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 25 6.1 SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 25 6.1 SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.0 SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.0 SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 8.0 >SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1040 Score = 29.5 bits (63), Expect = 0.37 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -2 Query: 568 LFDERTAKIQGSQITSQTNIFKDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKT 389 L D K+Q Q +FKD L +++++ ++ A TL E K GL+ +K Sbjct: 345 LSDSNNQKVQDDQQQQLEELFKD-LDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKR 403 Query: 388 GQLKEPKTGKLVD 350 + K G L D Sbjct: 404 LEESSKKGGILAD 416 >SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schizosaccharomyces pombe|chr 2|||Manual Length = 1107 Score = 29.5 bits (63), Expect = 0.37 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 135 FNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFL 257 F + + Y L L+N N+TW ++VLLWL Q L Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQAL 143 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 28.3 bits (60), Expect = 0.86 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Frame = +3 Query: 105 YFSIFHFW-FYF-NITLNYFFRLC 170 YFS+F F+ F F ++ N+FFRLC Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136 >SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 284 Score = 27.9 bits (59), Expect = 1.1 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -1 Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81 EK+ + K ++ S + D ++K+T+ KK E K KD + S K S Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKK-------KEHKKKDKESSSKKRKSG 218 Query: 80 PSISEDPKKDVSKEKLKTEITPTEKK 3 S E+ KK K K K E T + +K Sbjct: 219 SSDKEEKKKKKIKLKDKPESTSSVEK 244 >SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 27.5 bits (58), Expect = 1.5 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = -1 Query: 203 VSADKATVDKVTEPKKVIQ-RNIEVEPKVKDAKVSVKDI--PSRPSISEDPKKDVSKEKL 33 V K V++PK+ + + EP+VK S + PS+ ++ +K+ + + Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQP 484 Query: 32 KTEITPTEK 6 K E TP EK Sbjct: 485 KREKTPVEK 493 Score = 26.6 bits (56), Expect = 2.6 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Frame = -1 Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDK-VTEPKKVIQRNIEVEPKVKDAKVSVKDIPS 84 E K P KV EEPS+ D ++ VT+PK+ K K K S Sbjct: 452 EVKPTTPSASKV-EEPSKKRDEDNHQKEETVTQPKR---------EKTPVEKSFPKPASS 501 Query: 83 RPSISEDPKKDVSKEKLKTEITPTEKK 3 + SED KK+ S+EK K E++ K Sbjct: 502 PVTFSEDVKKEPSEEK-KLEVSDEAPK 527 >SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 27.5 bits (58), Expect = 1.5 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -1 Query: 131 EPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPT 12 +P D K +PS E+ D+ K+KT I P+ Sbjct: 238 QPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIKPS 277 >SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 27.5 bits (58), Expect = 1.5 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -1 Query: 200 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKT 27 ++ K D+ + P + Q+ +EV + KD+K + ++ E PKK K KT Sbjct: 273 ASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKT 330 >SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 500 Score = 26.6 bits (56), Expect = 2.6 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = +3 Query: 126 WFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFL 257 WF++ +T+ +FF+ S +S L W H+FL Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFL 313 >SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 233 Score = 26.6 bits (56), Expect = 2.6 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -1 Query: 194 DKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51 DK + KKV Q+N E+E K D K+S ++P + +++ KD Sbjct: 21 DKKSQSLEEHEKKVQQKNEELEKKAAD-KISRDELPEK-QLAQSNDKD 66 >SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosaccharomyces pombe|chr 1|||Manual Length = 769 Score = 26.6 bits (56), Expect = 2.6 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 505 KDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKTGQ-LKEP 371 K ALA I +S +Y+V A+ +T K+ D+ G LK+P Sbjct: 264 KVALASCYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKP 309 >SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 466 Score = 26.2 bits (55), Expect = 3.5 Identities = 9/18 (50%), Positives = 15/18 (83%) Frame = -2 Query: 217 NQVELCPLIKRLLTRLQS 164 N+V+LCPL++ +TR+ S Sbjct: 319 NRVQLCPLVRSTVTRILS 336 >SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor Sec74|Schizosaccharomyces pombe|chr 1|||Manual Length = 928 Score = 25.8 bits (54), Expect = 4.6 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 336 AAFFISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGS 479 ++ F+S + S P +SP T++ + LAASTL I SGS Sbjct: 154 SSIFLSNWSTIFSSNASPTDSQLSPTHTST--IAELAASTLSIFPSGS 199 >SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 636 Score = 25.8 bits (54), Expect = 4.6 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Frame = -1 Query: 248 MQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKV-SVKDI-PSRPS 75 +QP Q + +PS V + V P + +Q +P V +VK P++PS Sbjct: 393 IQPVQSTQYYQPSSPVQPVQNGVP--APPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQPS 450 Query: 74 ISEDPKKDVSKEKLKTEITPT 12 + + K+ V + + +ITPT Sbjct: 451 LEDAAKRRVEEMLRQMDITPT 471 >SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1067 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = -1 Query: 167 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 60 EP+K ++ + K + V+V+++P+ P +DP Sbjct: 305 EPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDP 340 >SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 618 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 217 NQVELCPLIKRLLTRL 170 NQVELC +I R+LT + Sbjct: 395 NQVELCKIIHRMLTEV 410 >SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosaccharomyces pombe|chr 2|||Manual Length = 559 Score = 25.4 bits (53), Expect = 6.1 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -2 Query: 568 LFDERTA-KIQGSQITSQTNIFKDALAKKIIDPESVIYNVEAAKPVTLQEAVKIG 407 LF + TA I I+ +I K + I PE+++ + KP++ + ++K+G Sbjct: 121 LFTKETAFNILLQIISGIEHIHKHGFMHRDIKPENILVKRISPKPISSRYSIKLG 175 >SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 25.4 bits (53), Expect = 6.1 Identities = 10/37 (27%), Positives = 26/37 (70%) Frame = +3 Query: 420 ASCKVTGLAASTLYITDSGSIIFLARASLKILVCEVI 530 A+ + L A++ ++TD+ +IFL R+++ +L+ +++ Sbjct: 98 AASGIIHLGATSCFVTDNADLIFL-RSAMDLLIPKLV 133 >SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 283 Score = 25.0 bits (52), Expect = 8.0 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +2 Query: 242 VASISFHRLSSLYYCHTSEYRSCDHSD*PNFCS 340 +AS S++ +S YCH S C D C+ Sbjct: 57 IASTSYYNISEGTYCHVSGSNLCVSPDVIAICA 89 >SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 387 Score = 25.0 bits (52), Expect = 8.0 Identities = 12/50 (24%), Positives = 22/50 (44%) Frame = -1 Query: 200 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51 +A K V+ + P + P+V S+ +P +I E+P +D Sbjct: 273 TAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSED 322 >SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 222 Score = 25.0 bits (52), Expect = 8.0 Identities = 9/32 (28%), Positives = 22/32 (68%) Frame = -1 Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVK 96 K +DKV EP+ + +R ++++ ++ D V+++ Sbjct: 45 KCQLDKVAEPQGLSKRIMDLQGRIYDLNVTME 76 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,914,092 Number of Sequences: 5004 Number of extensions: 36398 Number of successful extensions: 181 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 181 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 248115846 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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