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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0889
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   0.37 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    29   0.37 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.86 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    28   1.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.5  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   1.5  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   1.5  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   2.6  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   3.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   4.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   4.6  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   6.1  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   6.1  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.0  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.0  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.0  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = -2

Query: 568 LFDERTAKIQGSQITSQTNIFKDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKT 389
           L D    K+Q  Q      +FKD L +++++  ++     A    TL E  K GL+ +K 
Sbjct: 345 LSDSNNQKVQDDQQQQLEELFKD-LDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKR 403

Query: 388 GQLKEPKTGKLVD 350
            +    K G L D
Sbjct: 404 LEESSKKGGILAD 416


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 135 FNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFL 257
           F + + Y   L  L+N       N+TW   ++VLLWL Q L
Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQAL 143


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +3

Query: 105 YFSIFHFW-FYF-NITLNYFFRLC 170
           YFS+F F+ F F ++  N+FFRLC
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -1

Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81
           EK+     + K  ++ S   + D   ++K+T+ KK        E K KD + S K   S 
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKK-------KEHKKKDKESSSKKRKSG 218

Query: 80  PSISEDPKKDVSKEKLKTEITPTEKK 3
            S  E+ KK   K K K E T + +K
Sbjct: 219 SSDKEEKKKKKIKLKDKPESTSSVEK 244


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 203 VSADKATVDKVTEPKKVIQ-RNIEVEPKVKDAKVSVKDI--PSRPSISEDPKKDVSKEKL 33
           V   K     V++PK+  + +    EP+VK    S   +  PS+    ++ +K+ +  + 
Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQP 484

Query: 32  KTEITPTEK 6
           K E TP EK
Sbjct: 485 KREKTPVEK 493



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -1

Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDK-VTEPKKVIQRNIEVEPKVKDAKVSVKDIPS 84
           E K   P   KV EEPS+    D    ++ VT+PK+          K    K   K   S
Sbjct: 452 EVKPTTPSASKV-EEPSKKRDEDNHQKEETVTQPKR---------EKTPVEKSFPKPASS 501

Query: 83  RPSISEDPKKDVSKEKLKTEITPTEKK 3
             + SED KK+ S+EK K E++    K
Sbjct: 502 PVTFSEDVKKEPSEEK-KLEVSDEAPK 527


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 131 EPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPT 12
           +P   D K        +PS  E+   D+   K+KT I P+
Sbjct: 238 QPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIKPS 277


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 200 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKT 27
           ++ K   D+ + P +  Q+ +EV  + KD+K        + ++ E PKK   K   KT
Sbjct: 273 ASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKT 330


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 126 WFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFL 257
           WF++ +T+ +FF+      S  +S            L W H+FL
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFL 313


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 194 DKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51
           DK +       KKV Q+N E+E K  D K+S  ++P +  +++   KD
Sbjct: 21  DKKSQSLEEHEKKVQQKNEELEKKAAD-KISRDELPEK-QLAQSNDKD 66


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 505 KDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKTGQ-LKEP 371
           K ALA   I  +S +Y+V  A+ +T     K+   D+  G  LK+P
Sbjct: 264 KVALASCYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKP 309


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 217 NQVELCPLIKRLLTRLQS 164
           N+V+LCPL++  +TR+ S
Sbjct: 319 NRVQLCPLVRSTVTRILS 336


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 336 AAFFISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGS 479
           ++ F+S    +  S   P    +SP  T++  +  LAASTL I  SGS
Sbjct: 154 SSIFLSNWSTIFSSNASPTDSQLSPTHTST--IAELAASTLSIFPSGS 199


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -1

Query: 248 MQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKV-SVKDI-PSRPS 75
           +QP Q   + +PS  V   +  V     P + +Q     +P      V +VK   P++PS
Sbjct: 393 IQPVQSTQYYQPSSPVQPVQNGVP--APPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQPS 450

Query: 74  ISEDPKKDVSKEKLKTEITPT 12
           + +  K+ V +   + +ITPT
Sbjct: 451 LEDAAKRRVEEMLRQMDITPT 471


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 167 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 60
           EP+K ++    +    K + V+V+++P+ P   +DP
Sbjct: 305 EPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDP 340


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 217 NQVELCPLIKRLLTRL 170
           NQVELC +I R+LT +
Sbjct: 395 NQVELCKIIHRMLTEV 410


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 568 LFDERTA-KIQGSQITSQTNIFKDALAKKIIDPESVIYNVEAAKPVTLQEAVKIG 407
           LF + TA  I    I+   +I K     + I PE+++    + KP++ + ++K+G
Sbjct: 121 LFTKETAFNILLQIISGIEHIHKHGFMHRDIKPENILVKRISPKPISSRYSIKLG 175


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/37 (27%), Positives = 26/37 (70%)
 Frame = +3

Query: 420 ASCKVTGLAASTLYITDSGSIIFLARASLKILVCEVI 530
           A+  +  L A++ ++TD+  +IFL R+++ +L+ +++
Sbjct: 98  AASGIIHLGATSCFVTDNADLIFL-RSAMDLLIPKLV 133


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 242 VASISFHRLSSLYYCHTSEYRSCDHSD*PNFCS 340
           +AS S++ +S   YCH S    C   D    C+
Sbjct: 57  IASTSYYNISEGTYCHVSGSNLCVSPDVIAICA 89


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 200 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51
           +A K  V+  + P      +    P+V     S+  +P   +I E+P +D
Sbjct: 273 TAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSED 322


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = -1

Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVK 96
           K  +DKV EP+ + +R ++++ ++ D  V+++
Sbjct: 45  KCQLDKVAEPQGLSKRIMDLQGRIYDLNVTME 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,092
Number of Sequences: 5004
Number of extensions: 36398
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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