Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0889
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0033 - 7585267-7586028 34 0.071
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 33 0.12
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 31 0.88
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 2.7
03_04_0229 - 19018521-19018927,19019132-19019795 29 2.7
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 28 4.7
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 28 4.7
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 6.2
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 28 6.2
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 6.2
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 6.2
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 27 8.2
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 27 8.2
02_04_0143 + 20172128-20172355,20172452-20173174 27 8.2
01_07_0141 - 41390483-41391448 27 8.2
>05_03_0033 - 7585267-7586028
Length = 253
Score = 34.3 bits (75), Expect = 0.071
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = -1
Query: 245 QPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 66
+P + E S S K+ TEPK Q + EPK ++K K P R S S+
Sbjct: 158 EPNPETKAEPKSEPKSEPKSEPTPQTEPKAESQPEPKTEPK-SESKAEPK--PERKSYSK 214
Query: 65 DPKKDVSKEKLKTEITPTEK 6
+ SK + KTE P K
Sbjct: 215 SKPEPESKPEAKTEPQPESK 234
>08_01_0058 +
388989-389102,389226-389337,389457-389483,389787-389859,
389958-390061,390144-390358,390429-390528,390739-390805,
391628-391716,391810-391948,392057-392157,392921-393088,
393302-393510
Length = 505
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 203 VSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTE 24
+ A A V+ P + Q NI + V + + ++ RPS ++ + DV + K K E
Sbjct: 414 IKASSAAVEVTPSPPVLAQNNILMTKDVAEGNATSEN--DRPSAVDNMEVDVGENKAKME 471
Query: 23 ITP 15
+TP
Sbjct: 472 VTP 474
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = -1
Query: 230 KVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51
K +P+ + + +A K V+Q N E + K K KVSV +P + IS K
Sbjct: 196 KRMPKPTAVSNTPEAGAIKKLYTSVVVQTNKERDEKNKFGKVSV--LPEKDVISSSVKST 253
Query: 50 VSKEKLKTEITPTEK 6
+K K++ + +P +K
Sbjct: 254 EAKNKVRNK-SPAKK 267
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -1
Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81
+K+ ++D ++P + + + EP++ QR+ + EPK + ++VS D P R
Sbjct: 272 QKEKKGQREDSEDDKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVSGDDEPRR 331
Query: 80 PSISEDPKKD 51
E PK D
Sbjct: 332 RR-QEMPKHD 340
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -1
Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 66
+A+V ++ EP +E EP+V + VS +++P +PS+ E
Sbjct: 10 EASVSRIEEPPV-----LESEPEVSTSLVSTRELPPKPSLVE 46
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 158 KVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPTE 9
+++ N++ + K+ A S+K I R S K D+ K E+TP E
Sbjct: 10 RLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEE 59
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 365 CFRFF*LSCFDVNKPYFYSFL*SNWFSSLYIVYYR 469
C + L + PYF FL N+F S YI++ R
Sbjct: 95 CLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRR 129
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 315 TATSPIFAAFFISTNLPVLGS-FNCPVLMSISPIFT 419
+A+SPIF STN P GS P + SP+F+
Sbjct: 874 SASSPIFCNRLTSTNAPPFGSPATSPFSSTSSPVFS 909
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 432 VTGLAASTLYITDSGSIIF--LARASLKILVCEVIWDP*IFAVLSS 563
VTG+ A Y+ D+G ++ RA L LV IWD + +L S
Sbjct: 528 VTGMPADMNYLADTGWVVTTRARRARLPSLVENDIWDKPSWQILES 573
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 388 GQLKEPKTGKLVDIKKAAKIGLVAVIAA 305
G +++PK G L D+ KA K+ A+IAA
Sbjct: 331 GMVRQPKWGHLRDVHKAIKLCEPALIAA 358
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = -1
Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDA------KVSVKDIPSRP--SISEDPKKDVSKEK 36
KA V+ E K + E EPK ++ K V + P + +E+PK + S E+
Sbjct: 119 KAKVEAAVEETKAEETKAEEEPKAEEPAKEEEPKAEVAAAAAAPPEAGTEEPKAEASSEE 178
Query: 35 LKTE 24
KTE
Sbjct: 179 AKTE 182
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 108 FSIFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWF 218
F + F+ F ++L+YF + N + SRF+SG +T F
Sbjct: 72 FPGYSFFLVF-LSLHYFVHIQNYLFSRFLSGAMATRF 107
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 556 RTAKIQGSQITSQTNIFKDALAKKI 482
R AKI + I QTN++K+A ++K+
Sbjct: 351 RAAKIPRNYIIDQTNVYKNARSRKL 375
>02_04_0143 + 20172128-20172355,20172452-20173174
Length = 316
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -1
Query: 161 KKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEIT 18
++V + V+P + PS PS ++D +++ SKE+ +++
Sbjct: 261 QEVAEEEKRVDPDSVQVAAAASSTPSPPSSADDDEEEKSKEEAAADVS 308
>01_07_0141 - 41390483-41391448
Length = 321
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 345 FISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGSII 485
F+S +P L + P+L ++ P F S G+ S T SG+++
Sbjct: 160 FMSYVIPFLERTHAPLLANLYPYFIYSYNPGGMDISFALFTASGAVV 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,321,067
Number of Sequences: 37544
Number of extensions: 198953
Number of successful extensions: 701
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -