BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0889 (578 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_03_0033 - 7585267-7586028 34 0.071 08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 33 0.12 04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 31 0.88 08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 2.7 03_04_0229 - 19018521-19018927,19019132-19019795 29 2.7 07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 28 4.7 01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 28 4.7 12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 6.2 08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 28 6.2 03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 6.2 01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 6.2 06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 27 8.2 04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 27 8.2 02_04_0143 + 20172128-20172355,20172452-20173174 27 8.2 01_07_0141 - 41390483-41391448 27 8.2 >05_03_0033 - 7585267-7586028 Length = 253 Score = 34.3 bits (75), Expect = 0.071 Identities = 26/80 (32%), Positives = 35/80 (43%) Frame = -1 Query: 245 QPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 66 +P + E S S K+ TEPK Q + EPK ++K K P R S S+ Sbjct: 158 EPNPETKAEPKSEPKSEPKSEPTPQTEPKAESQPEPKTEPK-SESKAEPK--PERKSYSK 214 Query: 65 DPKKDVSKEKLKTEITPTEK 6 + SK + KTE P K Sbjct: 215 SKPEPESKPEAKTEPQPESK 234 >08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-389859, 389958-390061,390144-390358,390429-390528,390739-390805, 391628-391716,391810-391948,392057-392157,392921-393088, 393302-393510 Length = 505 Score = 33.5 bits (73), Expect = 0.12 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -1 Query: 203 VSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTE 24 + A A V+ P + Q NI + V + + ++ RPS ++ + DV + K K E Sbjct: 414 IKASSAAVEVTPSPPVLAQNNILMTKDVAEGNATSEN--DRPSAVDNMEVDVGENKAKME 471 Query: 23 ITP 15 +TP Sbjct: 472 VTP 474 >04_03_0850 - 20269047-20270595,20270708-20270751,20271248-20271329, 20274027-20274115 Length = 587 Score = 30.7 bits (66), Expect = 0.88 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -1 Query: 230 KVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 51 K +P+ + + +A K V+Q N E + K K KVSV +P + IS K Sbjct: 196 KRMPKPTAVSNTPEAGAIKKLYTSVVVQTNKERDEKNKFGKVSV--LPEKDVISSSVKST 253 Query: 50 VSKEKLKTEITPTEK 6 +K K++ + +P +K Sbjct: 254 EAKNKVRNK-SPAKK 267 >08_02_1147 - 24688686-24689729,24689875-24690036,24690339-24690368, 24690713-24690860,24691302-24691489 Length = 523 Score = 29.1 bits (62), Expect = 2.7 Identities = 19/70 (27%), Positives = 35/70 (50%) Frame = -1 Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81 +K+ ++D ++P + + + EP++ QR+ + EPK + ++VS D P R Sbjct: 272 QKEKKGQREDSEDDKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVSGDDEPRR 331 Query: 80 PSISEDPKKD 51 E PK D Sbjct: 332 RR-QEMPKHD 340 >03_04_0229 - 19018521-19018927,19019132-19019795 Length = 356 Score = 29.1 bits (62), Expect = 2.7 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -1 Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 66 +A+V ++ EP +E EP+V + VS +++P +PS+ E Sbjct: 10 EASVSRIEEPPV-----LESEPEVSTSLVSTRELPPKPSLVE 46 >07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 Length = 148 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 158 KVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPTE 9 +++ N++ + K+ A S+K I R S K D+ K E+TP E Sbjct: 10 RLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEE 59 >01_06_0246 + 27845898-27846001,27846235-27846237,27846472-27846700, 27846814-27846968,27847091-27847136,27847233-27847324, 27847425-27847521,27847649-27847705,27847799-27847927 Length = 303 Score = 28.3 bits (60), Expect = 4.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 365 CFRFF*LSCFDVNKPYFYSFL*SNWFSSLYIVYYR 469 C + L + PYF FL N+F S YI++ R Sbjct: 95 CLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRR 129 >12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713, 15907146-15907415,15908045-15908125,15909033-15909599, 15909677-15910053,15910326-15911613 Length = 1030 Score = 27.9 bits (59), Expect = 6.2 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +3 Query: 315 TATSPIFAAFFISTNLPVLGS-FNCPVLMSISPIFT 419 +A+SPIF STN P GS P + SP+F+ Sbjct: 874 SASSPIFCNRLTSTNAPPFGSPATSPFSSTSSPVFS 909 >08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944, 2875909-2875947,2876309-2876354,2877380-2877922, 2878827-2880847,2880972-2881215,2881642-2881684, 2881923-2881962,2883580-2883675,2883712-2883759, 2883964-2884290 Length = 1498 Score = 27.9 bits (59), Expect = 6.2 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +3 Query: 432 VTGLAASTLYITDSGSIIF--LARASLKILVCEVIWDP*IFAVLSS 563 VTG+ A Y+ D+G ++ RA L LV IWD + +L S Sbjct: 528 VTGMPADMNYLADTGWVVTTRARRARLPSLVENDIWDKPSWQILES 573 >03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242, 8166419-8166526,8166676-8166783,8166884-8166993, 8167122-8167228,8167349-8167566,8167674-8167841, 8168033-8168151,8168438-8168525,8168655-8168849, 8168968-8169271,8169363-8169480,8170034-8170133, 8170283-8170468 Length = 861 Score = 27.9 bits (59), Expect = 6.2 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 388 GQLKEPKTGKLVDIKKAAKIGLVAVIAA 305 G +++PK G L D+ KA K+ A+IAA Sbjct: 331 GMVRQPKWGHLRDVHKAIKLCEPALIAA 358 >01_06_1519 + 37942389-37943702,37944142-37944266,37944358-37944499, 37944602-37944848,37946139-37946196,37947629-37947913, 37947988-37948120 Length = 767 Score = 27.9 bits (59), Expect = 6.2 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -1 Query: 191 KATVDKVTEPKKVIQRNIEVEPKVKDA------KVSVKDIPSRP--SISEDPKKDVSKEK 36 KA V+ E K + E EPK ++ K V + P + +E+PK + S E+ Sbjct: 119 KAKVEAAVEETKAEETKAEEEPKAEEPAKEEEPKAEVAAAAAAPPEAGTEEPKAEASSEE 178 Query: 35 LKTE 24 KTE Sbjct: 179 AKTE 182 >06_03_1075 + 27399279-27399376,27399449-27399555,27400791-27400898, 27401763-27401860,27401983-27402033,27402137-27402228, 27402360-27402459,27402765-27402884,27402977-27403045, 27403299-27403345,27403428-27403483,27404760-27404800, 27405155-27405260,27406728-27406860,27406937-27407357 Length = 548 Score = 27.5 bits (58), Expect = 8.2 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 108 FSIFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWF 218 F + F+ F ++L+YF + N + SRF+SG +T F Sbjct: 72 FPGYSFFLVF-LSLHYFVHIQNYLFSRFLSGAMATRF 107 >04_04_1285 - 32382614-32382720,32383032-32383710,32383816-32383926, 32384007-32384065,32384163-32384271,32384387-32384575, 32384650-32385476,32385501-32385633 Length = 737 Score = 27.5 bits (58), Expect = 8.2 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 556 RTAKIQGSQITSQTNIFKDALAKKI 482 R AKI + I QTN++K+A ++K+ Sbjct: 351 RAAKIPRNYIIDQTNVYKNARSRKL 375 >02_04_0143 + 20172128-20172355,20172452-20173174 Length = 316 Score = 27.5 bits (58), Expect = 8.2 Identities = 11/48 (22%), Positives = 25/48 (52%) Frame = -1 Query: 161 KKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEIT 18 ++V + V+P + PS PS ++D +++ SKE+ +++ Sbjct: 261 QEVAEEEKRVDPDSVQVAAAASSTPSPPSSADDDEEEKSKEEAAADVS 308 >01_07_0141 - 41390483-41391448 Length = 321 Score = 27.5 bits (58), Expect = 8.2 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +3 Query: 345 FISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGSII 485 F+S +P L + P+L ++ P F S G+ S T SG+++ Sbjct: 160 FMSYVIPFLERTHAPLLANLYPYFIYSYNPGGMDISFALFTASGAVV 206 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,321,067 Number of Sequences: 37544 Number of extensions: 198953 Number of successful extensions: 701 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 673 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 700 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1352600424 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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