Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0889
         (578 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095933-1|AAM34435.1|  505|Anopheles gambiae cytochrome P450 pr...    25   2.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   5.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.5  

>AY095933-1|AAM34435.1|  505|Anopheles gambiae cytochrome P450
           protein.
          Length = 505

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 233 DKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKK 54
           D+V  E  R+       +   T+P KV   N+ +EP      + +  I    SI  DP++
Sbjct: 363 DQVINETLRMYPPVPQLIRVTTQPYKVEGANVSLEPDTM-LMIPIYAIHHDASIYPDPER 421


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = -1

Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81
           E +L + ++     +  R  S DK  +    E +K   R    +  +KDAK  V      
Sbjct: 229 ETELKETRKQLEELDGQRKSSGDKQLL-LTQEIQKAQDRLKNAQKALKDAKKDVVTAKDE 287

Query: 80  PSISEDPKKDVSKEKLKTEIT 18
            S+     + + +EK K ++T
Sbjct: 288 KSVLATEHQQLLREKTKLDLT 308


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 446 SLYIVYYRFRIYNFLSK 496
           SLY  Y RFR   +LSK
Sbjct: 442 SLYCSYNRFRYRRYLSK 458


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,877
Number of Sequences: 2352
Number of extensions: 8329
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)