Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0889
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 200 TQFYLVPQTPCLALV--ASISFHRLSSLYYCHTSEYRS 307
           T  Y+V     L +   A  SFHRLSS    H S+  S
Sbjct: 200 TMVYMVDNKNTLIIYQNADDSFHRLSSHTLNHNSDKMS 237


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 463 IYNVEAAKPVTLQEAVKIGLIDIKTGQLKEPKTGK 359
           I+ V   KP T  + +K G+I+ +   LK  +TG+
Sbjct: 132 IHRVLPGKPTTTSDELKRGIINPEDVMLKR-RTGE 165


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 174 LVNSRFISGHNSTWFLKHL 230
           +++S F + HN+T +L H+
Sbjct: 305 IISSVFTTRHNATCYLSHV 323


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 174 LVNSRFISGHNSTWFLKHL 230
           +++S F + HN+T +L H+
Sbjct: 11  IISSVFTTRHNATCYLSHV 29


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 254 KLMQPKQD---KVFEEPSRIVSADKATVDK 174
           +L++P  D     F++ S+IVSA K  +DK
Sbjct: 103 RLLKPYPDWSFAEFKDCSKIVSAFKIAIDK 132


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 548 KNSRIPNHLTN*YLQRCSC*ENYRS*ICNIQCRG 447
           +N RI ++ +N    +CS  ++    +C   C G
Sbjct: 137 RNDRIDSYKSNLKCDKCSTYQSNGEEVCLENCTG 170


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 369 LGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGSIIFL 491
           LG     VL+ +  +  +    TGLA  ++ +   GSIIF+
Sbjct: 24  LGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIFV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,956
Number of Sequences: 438
Number of extensions: 2458
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)