Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0889
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22275.1 68414.m02784 expressed protein 33 0.10
At1g73200.1 68414.m08471 expressed protein 33 0.14
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 31 0.42
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot... 31 0.42
At1g17130.1 68414.m02087 cell cycle control protein-related cont... 31 0.73
At5g35200.1 68418.m04171 epsin N-terminal homology (ENTH) domain... 30 0.97
At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains... 30 0.97
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 1.7
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 29 2.2
At5g60030.1 68418.m07527 expressed protein 29 3.0
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com... 29 3.0
At2g45860.1 68415.m05704 expressed protein 29 3.0
At2g34730.1 68415.m04265 myosin heavy chain-related low similari... 29 3.0
At1g65550.1 68414.m07436 xanthine/uracil permease family protein... 28 3.9
At1g54926.1 68414.m06272 hypothetical protein 28 3.9
At4g16070.1 68417.m02437 lipase class 3 family protein low simil... 28 5.2
At5g40450.1 68418.m04905 expressed protein 27 6.8
At5g25420.1 68418.m03016 xanthine/uracil permease family protein... 27 6.8
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 27 6.8
At3g22860.1 68416.m02882 eukaryotic translation initiation facto... 27 6.8
At3g50430.1 68416.m05516 expressed protein 27 9.0
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr... 27 9.0
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 27 9.0
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -1
Query: 248 MQPKQDKVFEEPSRIVSADKATVDKVT-EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSI 72
+Q ++ + + S + + T+DK+ E K ++ +N E E + K + +
Sbjct: 371 LQNDKESLISQLSGVRCSASQTIDKLEFEAKGLVLKNAETESVISKLKEEIDTLLESVRT 430
Query: 71 SEDPKKDVSKEKLKTEITPTEK 6
SED KK++S + EI +K
Sbjct: 431 SEDKKKELSIKLSSLEIESKDK 452
>At1g73200.1 68414.m08471 expressed protein
Length = 779
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -1
Query: 236 QDKVFEEPSRIVSADKATVDKVTEPKKVIQR-NIEVEPKVKDAKVSVKDIPSRPSISEDP 60
QD + + + K+ DK +++ + NI +P++++ VS PS SI+
Sbjct: 622 QDSTSDRENLEAAEAKSKADKPPTSEQMQKTVNIPQKPRIEEESVSADTAPSANSIALLV 681
Query: 59 KKDVSKEKLKTEITPTEKK 3
+ D S E+LKT + + +K
Sbjct: 682 ESDKSLEELKTPLLESSEK 700
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 31.5 bits (68), Expect = 0.42
Identities = 17/75 (22%), Positives = 40/75 (53%)
Frame = -1
Query: 245 QPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 66
+P D+V +P ++ + T P+ ++ ++E++P+ K KV ++ + + E
Sbjct: 50 EPATDQVQNKPPEPITMPSSK----TNPETKLKPDLEIQPEEKKEKVLAEETKQK-VVPE 104
Query: 65 DPKKDVSKEKLKTEI 21
+ K++V E+ K E+
Sbjct: 105 ESKQEVPPEESKREV 119
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
(PCAT2) contains Pfam domains PF02135: TAZ zinc finger
and PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2 GI:12597460
Length = 1691
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 197 ADKATVDKVTEPK-KVIQRNIEVEPKVKDAKVSV-KDIPSRPSISEDPKKDVSKEKLKTE 24
+D K E K +V +++ P KD K+ + ++IP + +S+ K+D+S E
Sbjct: 806 SDVRAPSKYFEVKAEVSDFSVQTRPGFKDTKIGIAENIPKQRPVSQPDKQDLSDVSPMQE 865
Query: 23 ITPTEKK 3
T EK+
Sbjct: 866 TTKVEKE 872
>At1g17130.1 68414.m02087 cell cycle control protein-related
contains similarity to Swiss-Prot:Q9P7C5 cell cycle
control protein cwf16 [Schizosaccharomyces pombe]
Length = 331
Score = 30.7 bits (66), Expect = 0.73
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 221 EEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPK---KD 51
E+ RI D+A + + +K + R I E D DI PS+ ++ K D
Sbjct: 182 EKVKRIEEEDEAVIKSIFGKQKEVIRRIADEEI--DDDYDDDDIDDYPSLQKEKKGSSSD 239
Query: 50 VSKEKLKTEITPT 12
+SK++ TE++P+
Sbjct: 240 LSKKRKATEVSPS 252
>At5g35200.1 68418.m04171 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein short form, Rattus
norvegicus, EMBL:AF041373;similar to Chain A, Calm-N
N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid
Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo
sapiens}
Length = 544
Score = 30.3 bits (65), Expect = 0.97
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 248 MQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPS-I 72
+Q ++ V E P + V+K+T PK+++ E+ PKV V++ P+ P +
Sbjct: 293 LQAMEEYVKEAPLAAGVKKEQVVEKLTAPKEILAIEYEIPPKV------VEEKPASPEPV 346
Query: 71 SEDPKKDVSKE 39
+ +K V K+
Sbjct: 347 KAEAEKPVEKQ 357
>At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains
Pfam profiles: PF02309 AUX/IAA family and PF02362: B3
DNA binding domain
Length = 638
Score = 30.3 bits (65), Expect = 0.97
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -1
Query: 215 PSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKE 39
P R ++ K T+D ++PK I + + E K + A+ S K++ S+ S S + V +
Sbjct: 474 PMRPINISKPTMDSHSDPKSEISK-VSEEKKQEPAEGSPKEVQSKQSSSTRSRTKVQMQ 531
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 125 KVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPTEK 6
K K K S+K P + ++ P+++ ++EK K ITP K
Sbjct: 929 KSKKLKSSLKVNPLKMKKTKSPQREFTREKKKENITPQRK 968
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 91 ISLTLTLASFTFGSTSILR*ITFLGSVTLSTVALSADTILLGSSNTLSC--FGCINFFSP 264
I+L L+ +FT +T L S+ LS+ +L D +LGS +L+ C NF P
Sbjct: 581 INLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGDIKVLGSLTSLASLNISCNNFSGP 640
Query: 265 L 267
+
Sbjct: 641 I 641
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = -1
Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRN-----IEVEPKVKDAKVSVK 96
+KK +D V E+ + ++ + D+ KK ++N ++ + K++D + S +
Sbjct: 154 KKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAE 213
Query: 95 DIPSRPSISEDPKKDVSKEKLKTEITPTEKK 3
+ + ED + KEKL+ E E+K
Sbjct: 214 IKEKKKNKDEDVVDEKEKEKLEDEQRSGERK 244
>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
component family protein similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], respiratory burst oxidase
homolog from Solanum tuberosum [GI:16549089]; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 839
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 114 IFHFWFYFNITLNYFFRLCNLVNSRF--ISGHNSTWFLKHLVLL 239
IF F F + ++YF R + F ++G N+ W+ HL++L
Sbjct: 463 IFFMGFSFTLAMHYFRRNIVKLPKPFNVLAGFNAFWYAHHLLVL 506
>At2g45860.1 68415.m05704 expressed protein
Length = 79
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = -1
Query: 179 DKVTEPKKVIQRNIEVEPKVKDAKVS-VKDIPSRPSISEDPKK-----DVSKEKLKTEIT 18
+ + + KK + N++ E +++D K+ + ++ + KK V K+KLKT++T
Sbjct: 5 NNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKKGGFSVGKKKLKTKLT 64
Query: 17 PTEK 6
PT K
Sbjct: 65 PTAK 68
>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
to SP|P14105 Myosin heavy chain, nonmuscle (Cellular
myosin heavy chain) {Gallus gallus}
Length = 825
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = -1
Query: 260 EKKLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSR 81
E+K ++ ++ + S++ + DK+ V R +E KVK + + +
Sbjct: 604 ERKKIEVVSQQINDLQSQVERQETEIQDKIEALSVVSARELE---KVKGYETKISSLREE 660
Query: 80 PSISEDPKKDVSKEKLKTEITPTEKK 3
++ + K++ EK KTE +E K
Sbjct: 661 LELARESLKEMKDEKRKTEEKLSETK 686
>At1g65550.1 68414.m07436 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 541
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 333 FAAFFISTNLPVLGSFNCPVLMSISPI 413
F AFF S LP++ S C VL +S +
Sbjct: 394 FGAFFASIPLPIMASLYCIVLCFVSSV 420
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 254 KLMQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQR 144
K++ K +KV EP+R VSA + V++V + QR
Sbjct: 7 KILSRKNEKVQAEPARGVSAKRCKVERVPTNGCIAQR 43
>At4g16070.1 68417.m02437 lipase class 3 family protein low
similarity to calmodulin-binding heat-shock protein
CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
region
Length = 654
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 478 DPESVIYNVEAAKPVTLQEAVKIGLIDIKTGQLKEPKTGKLVDI 347
D E++ AAK +T +E V G D TGQ + P + +D+
Sbjct: 524 DSEAMEEEAAAAKEITEEETVITGGGDSSTGQNQSPVSASSMDL 567
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 6.8
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 242 PKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISED 63
P Q E PS ++ TVD+ E K +IE+ ++ + SV D+ S
Sbjct: 936 PLQKPTLESPSEVLEESSKTVDEKIEEK---TDSIEL-GEIAQEERSVTDLTPLQEESSQ 991
Query: 62 PKKDVSKEKL-KTEITPTEKK 3
P + + KL K E T E K
Sbjct: 992 PNEQEKETKLEKHEPTNEEVK 1012
>At5g25420.1 68418.m03016 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 419
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 333 FAAFFISTNLPVLGSFNCPVLMSIS 407
F AFF S LP++ S C VL +S
Sbjct: 331 FGAFFASIPLPIMASLYCIVLCFVS 355
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -1
Query: 230 KVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISED--PK 57
K ++ + IV + + DK E K + +E++ ++ K+ + ++ K
Sbjct: 19 KALKQKNEIVESSPVS-DKGKETKSFEKDLMEMQAMLEKMKIEKEKTEDLLKEKDEILRK 77
Query: 56 KDVSKEKLKTEITPTEK 6
K+V +EKLKTE+ +K
Sbjct: 78 KEVEQEKLKTELKKLQK 94
>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
subunit 8, putative / eIF3c, putative similar to
eukaryotic translation initiation factor 3 subunit 8
(eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
Length = 800
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -1
Query: 257 KKLMQPKQDKVFEEPSRIVSADKATV---DKVTEPKKVIQRNIEVEPKVKDAKVSVKD-I 90
K++++PK+DK FEE + + K + D V + + N ++ VK + +K +
Sbjct: 44 KRVVKPKKDKRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISKSVKTPTLYIKTLV 103
Query: 89 PSRPSISEDPKKDVSKEKLKT 27
++ED K +KEK+ T
Sbjct: 104 MLEDFLNEDNMK--TKEKMST 122
>At3g50430.1 68416.m05516 expressed protein
Length = 642
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -1
Query: 341 SCKNWASRCDRSSCTRWYXXXXXXXXGEKKLMQPKQDKVFEEPSRI 204
SC + RC R+ C W G PK+ KV E S +
Sbjct: 541 SCAEYLLRCLRAVCDSWTLFVEFPFEGSTDAPSPKRRKVLPETSEV 586
>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 494
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 151 ITFLGSVTLSTVA--LSADTILLGSSNTLSCFGCINFFSPLEL 273
+T LG+ LS+V LSA ++L SN + C F +PLEL
Sbjct: 156 LTQLGNRDLSSVPDFLSARSLLAPESNNNNTMLCGGFTAPLEL 198
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -1
Query: 221 EEPSRIVSADKATVDKVTEPKKVIQRNIEVE-PKVKDAKVSVKDIPSRPSISEDPKKDVS 45
++P+ + +A A D + + + + E P K AKVS K + S S++ +
Sbjct: 282 KKPTVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSK-TSKQESSSDESSDESD 340
Query: 44 KEKLKTE-ITPTEK 6
KE+ K E +TP +K
Sbjct: 341 KEESKDEKVTPKKK 354
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,738,708
Number of Sequences: 28952
Number of extensions: 178501
Number of successful extensions: 703
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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