Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0887
(524 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 4e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 4e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 184 4e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 184 4e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 4e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_54| Best HMM Match : Actin (HMM E-Value=0) 87 1e-17
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 70 1e-12
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 64 7e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 5e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 1e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 38 0.004
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.44
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 31 0.77
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.3
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.3
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 1.8
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 1.8
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 1.8
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 29 2.3
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.3
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 7.2
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 27 9.5
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 9.5
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35) 27 9.5
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 9.5
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 27 9.5
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 27 9.5
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 27 9.5
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 9.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 184 bits (448), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509
EKMTQIMFETFN+PAMYVAIQAVLS
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLS 142
Score = 119 bits (287), Expect = 1e-27
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = +1
Query: 85 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHR 264
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG+ +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 265 AK 270
+K
Sbjct: 61 SK 62
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 184 bits (448), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509
EKMTQIMFETFN+PAMYVAIQAVLS
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVLS 141
Score = 116 bits (280), Expect = 9e-27
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = +1
Query: 91 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHRAK 270
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG+ ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 184 bits (448), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509
EKMTQIMFETFN+PAMYVAIQAVLS
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVLS 141
Score = 118 bits (283), Expect = 4e-27
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +1
Query: 91 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHRAK 270
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG+ ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 184 bits (448), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509
EKMTQIMFETFN+PAMYVAIQAVLS
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLS 142
Score = 124 bits (298), Expect = 6e-29
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +1
Query: 85 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHR 264
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG+ +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 265 AK 270
+K
Sbjct: 61 SK 62
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (448), Expect = 4e-47
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434
EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509
EKMTQIMFETFN+PAMYVAIQAVLS
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLS 142
Score = 119 bits (287), Expect = 1e-27
Identities = 52/62 (83%), Positives = 59/62 (95%)
Frame = +1
Query: 85 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHR 264
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG+ +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 265 AK 270
+K
Sbjct: 61 SK 62
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 118 bits (283), Expect = 4e-27
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = +1
Query: 91 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHRAK 270
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG+ ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/34 (91%), Positives = 31/34 (91%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 356
EAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 429 NREKMTQIMFETFNTPAMYVAIQAVLS 509
N + M +IMFETFN+PAMYVAIQAVLS
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLS 104
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/102 (44%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Frame = +3
Query: 207 SGRDGRYGTEGLLCRREAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 383
S + G + L+ EA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 384 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 509
VLLTE PLNP NREKM ++MFE + +Y+AIQAVL+
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLT 145
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 103 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGE 255
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VG+
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGD 59
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = +3
Query: 336 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 509
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMA 2186
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 210
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 69.7 bits (163), Expect = 1e-12
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +3
Query: 384 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 509
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLS
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLS 167
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 64.1 bits (149), Expect = 7e-11
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +3
Query: 294 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 473
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 474 PAMYVAIQAVLS 509
PA ++ +VL+
Sbjct: 63 PAFFLCKNSVLT 74
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 94 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 210
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 79 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 225
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = +3
Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 401
EA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 289 EAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 207 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 91
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3
Query: 450 IMFETFNTPAMYVAIQAVLS 509
IMFE FN+PA+YVAIQAVLS
Sbjct: 1 IMFEAFNSPAVYVAIQAVLS 20
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 33.9 bits (74), Expect = 0.082
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 210 GRDGRYGTEGLLCRREAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 380
GR G + GL + S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 381 EEHPVLLTEAPLNPKANRE 437
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 182 GNTARGASSPAKPALHIPEPLSTT 111
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 182 GNTARGASSPAKPALHIPEPLSTT 111
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 177 VPLDRGKAPPSGRDGRYGTEGLLCRREAQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 350
V L + +GR+ G+ +CR++A ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRKKAP----LITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 351 TFYN 362
T N
Sbjct: 497 TCPN 500
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 182 GNTARGASSPAKPALHIPEPLSTT 111
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 410 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 502
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 216 DGRYGTEGLLCRREAQSKRGILTLKYPIEHGIVTNWDDMEK-IWHHTFYNELRVAPEEHP 392
D R +L +REA + G +P H WD++ K ++ + E+ + P P
Sbjct: 2939 DHRGAWNTMLLKREALQQTGQYLRLFPNLHNNEPYWDELAKEVYRYIGNKEVPLLPVHRP 2998
Query: 393 VLLTEAPLNPKANREKMTQIMFETF 467
V E+ K E+ +++ E F
Sbjct: 2999 V-EDESASEKKEQDEQASRVKIEWF 3022
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 294 PIEHGIVTNWDDMEKIWHHTFYNE 365
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 97 EVAALVVDNGSGMCKAGFAGDDAPRAV 177
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 316 VTIPCSMGYLRVRIPLLLCASLLHKSPSVP 227
V PC M LRVR+ C S+LH + P
Sbjct: 60 VACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 334 SMSSQLVTIPCSMGYLRVRIPLLLCASLLHKSPSVP 227
S+ V PC M L VR+ C S+LH + P
Sbjct: 2 SLLRDRVVCPCCMSVLCVRVACPCCVSVLHVRVACP 37
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -2
Query: 388 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCAS--LLHKSPSVPYRPS 215
CS + + C + ++V CS + V + ++C+ + H+ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 214 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 122
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 259 ASLLHKSPSVPYRPSRPD---GGAFPRSRGTRREEHH 158
ASL H++PS P P P G F + G +R +H
Sbjct: 618 ASLSHETPSTPQTPRSPTSSMSGPFDNAFGRKRSPYH 654
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 182 GNTARGASSPAKPALHIPEPLSTT 111
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 182 GNTARGASSPAKPALHIPEPLSTT 111
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 197 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 87
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 253 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 107
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 328 SSQLVTI--PCSMGYLRV-RIPLLLCASLLHKSPSVPYRP 218
S LV++ P S Y + RIP LC L PS PY+P
Sbjct: 260 SPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 253 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 103 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 207
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1514
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 289 LRVRIPLLLCASLLHKSPSVPYRPSRPDGGAFPR 188
L+ R+ L LC +++ +S V Y GG F R
Sbjct: 1128 LKTRLDLWLCGTIIQQSGPVSYVVKLSSGGVFRR 1161
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 114 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 1652 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 680 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 235 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 1090 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 33 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 240 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 130
++LSH + H L A +HG R +SCET L T
Sbjct: 114 IVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,793,645
Number of Sequences: 59808
Number of extensions: 425581
Number of successful extensions: 1350
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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