Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0886
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    29   0.53 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   3.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.5  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 462 NIITTFNNSLIFTFLLKYGLESVL-LRSYSEISILEQTLILDSDNNIIKY 608
           N IT F N    +  L+    S   L S+S I +LE   ILD  NN+IK+
Sbjct: 202 NRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKH 251


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 591 YLNQGSRSALRY*FQNKIEVIQIQARILVKR*KLGNY 481
           YL Q + S  R  F N +E+  ++AR       LG+Y
Sbjct: 43  YLTQWNNSGRRNGFSNNVELFNLEARSGASAFLLGSY 79


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 459 FNIITTFNNSLIFTFLLKYGLESVLLRSYSEISILEQTLILDSDNNII 602
           FNI    +NS  F+ LLK+  ++     Y++IS+L   L+ +S + +I
Sbjct: 274 FNIPNKLDNSASFSDLLKFVYKTSKPSPYAKISLL-HFLLTESKHFLI 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,419
Number of Sequences: 5004
Number of extensions: 38224
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)