Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0886
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-7|AAB94157.1|  338|Caenorhabditis elegans Seven tm rece...    30   1.5  
U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    28   4.5  

>AF038623-7|AAB94157.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 161 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -1

Query: 440 TAIIIIHCTDTILNL*SHYLKLVLYQLTIAFGISITLLSSTVIHVYF 300
           +A+ I+H  DT+     ++  L++  +   FG++IT ++   I+ +F
Sbjct: 71  SALAIMHLEDTVFESIPYFAFLLIVSMCGCFGVNITAIAINFIYRFF 117


>U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical
           protein C41G11.4c protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 450 FIANSYYNYSLYRHYFESIIPLFKARVVP 364
           FI N+Y ++S++ +Y    +P     VVP
Sbjct: 527 FITNNYSSFSIFSYYIVQFLPTLDLSVVP 555


>AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical
           protein T05G11.4 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 445 NEIHVLILSQLLIIP*FSPFY 507
           N IH+LI++ +LIIP + P Y
Sbjct: 82  NSIHILIITTILIIPFWIPHY 102


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 514 YFSKKVKIRELLKVVIILKHEF 449
           +F+KK  I++L K++II KH+F
Sbjct: 411 FFTKKFFIQKLKKLIIIQKHQF 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,475,134
Number of Sequences: 27780
Number of extensions: 208244
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)