Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0885
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   2.3  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    25   5.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   9.1  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    24   9.1  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   9.1  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    24   9.1  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 150 ISAVGYILNS*FIFHFCQIMSYPIIFVFVISSYYICTYCI 31
           IS  G  LN+ +    C++ SY   F+ V++S ++ + CI
Sbjct: 133 ISGTGPSLNASYK-SLCKLYSYENSFIVVLNSIFVVSSCI 171


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 422 CTSVCNYSNMTKKNKKIRTFI 360
           C +VC Y NM KK  + R  I
Sbjct: 44  CKNVCLYMNMPKKEVRTRCLI 64


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 361 LQHLRYYVYSILFSTYSVNSMYSNIL*FYIYT*IHFCI*HMNYSSNIHLKNS 206
           L+ LR   ++ LF T+S+  + + IL  YIY    +C+   N S     K+S
Sbjct: 170 LRGLREVTFA-LFITFSIVPIITGILTVYIYK-KKYCVIKFNKSGRSKKKDS 219


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 117 FIFHFCQIMSYPIIFVFVISSYYICTY 37
           F+F F  ++    I + +I  Y+ CTY
Sbjct: 25  FVFWFSVLIPIFFIALIIIKRYHSCTY 51


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 155 FSLVRLGIF*THNSYFIFVK*CHIQLFLFLS*VLTIFVLIALTIFAKE 12
           FS     IF T  +Y++      I +F+FL  +LT   +I  T    E
Sbjct: 405 FSFWLFSIFCTIAAYYLVSSSTKITVFIFLYLMLTFIGIIFSTFMTSE 452


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 270 ILKFIFAFNI*TILQTFI*RIVHVLSKLY 184
           +LK  F F   + + T++ ++ H +SKLY
Sbjct: 548 VLKNAFRFQETSTVVTYLFKLTHAVSKLY 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,379
Number of Sequences: 5004
Number of extensions: 31911
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)