BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0885 (445 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60570.1 68418.m07594 kelch repeat-containing F-box family pr... 27 4.3 At1g71390.1 68414.m08243 disease resistance family protein / LRR... 27 7.5 At1g62200.1 68414.m07016 proton-dependent oligopeptide transport... 26 10.0 >At5g60570.1 68418.m07594 kelch repeat-containing F-box family protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646 F-box domain Length = 393 Score = 27.5 bits (58), Expect = 4.3 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +1 Query: 40 STNIVRTYDKNKNNW 84 STN+V+ YDK KN W Sbjct: 299 STNMVKKYDKVKNKW 313 >At1g71390.1 68414.m08243 disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B [Lycopersicon esculentum] gi|3894391|gb|AAC78595 Length = 784 Score = 26.6 bits (56), Expect = 7.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 163 LTFSH*CGWVYFKLIIHISFLSNNVISNYFCFC 65 +T SH C W Y + I+ SFL +++ S FC Sbjct: 1 MTRSH-CYWFYCIITIYFSFLIHSLASPSLHFC 32 >At1g62200.1 68414.m07016 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family ; contains non-consensus GA donor site at intron 4 Length = 590 Score = 26.2 bits (55), Expect = 10.0 Identities = 8/26 (30%), Positives = 15/26 (57%) Frame = -1 Query: 235 YSSNIHLKNSSCVE*IILWPFNCFLT 158 Y+S +H N S +++W C++T Sbjct: 84 YTSELHESNVSAASDVMIWQGTCYIT 109 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,805,849 Number of Sequences: 28952 Number of extensions: 132608 Number of successful extensions: 217 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 217 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 712739520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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