Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0885
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60570.1 68418.m07594 kelch repeat-containing F-box family pr...    27   4.3  
At1g71390.1 68414.m08243 disease resistance family protein / LRR...    27   7.5  
At1g62200.1 68414.m07016 proton-dependent oligopeptide transport...    26   10.0 

>At5g60570.1 68418.m07594 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 393

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 40  STNIVRTYDKNKNNW 84
           STN+V+ YDK KN W
Sbjct: 299 STNMVKKYDKVKNKW 313


>At1g71390.1 68414.m08243 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
           [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 784

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 163 LTFSH*CGWVYFKLIIHISFLSNNVISNYFCFC 65
           +T SH C W Y  + I+ SFL +++ S    FC
Sbjct: 1   MTRSH-CYWFYCIITIYFSFLIHSLASPSLHFC 32


>At1g62200.1 68414.m07016 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family ; contains non-consensus GA donor site at intron
           4
          Length = 590

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 235 YSSNIHLKNSSCVE*IILWPFNCFLT 158
           Y+S +H  N S    +++W   C++T
Sbjct: 84  YTSELHESNVSAASDVMIWQGTCYIT 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,805,849
Number of Sequences: 28952
Number of extensions: 132608
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)