Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0884
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 0.35
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 0.61
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 1.1
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 25 1.9
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 2.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 2.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 24 3.2
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 24 3.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 24 3.2
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 24 3.2
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 24 3.2
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 24 4.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 4.3
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 24 4.3
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 24 4.3
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 24 4.3
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 24 4.3
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 23 5.7
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 23 7.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 23 7.5
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 23 7.5
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 23 7.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 23 7.5
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 23 9.9
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 23 9.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 23 9.9
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 23 9.9
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 23 9.9
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 23 9.9
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.5 bits (58), Expect = 0.35
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 164 PHPVAVSVPQYVKVPIPQPYPVHVTVEQP 250
P PVAV Q + I Q P+HV+ +P
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKP 306
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 0.61
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 131 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 226
V +++ +G P H ++V P YV +P P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 1.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 158 PIPHPVAVSVPQYVKVPIPQPYPVHV 235
P P P AV VP PIP P P +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757
Score = 22.6 bits (46), Expect = 9.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 188 PQYVKVPIPQPYPVHVTVEQPIL 256
P V VP P P P+ V PI+
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIM 758
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 233 RGPGRVEVWAPSRTAG 186
+G GRVE+W +RT G
Sbjct: 191 KGNGRVEIWFGARTPG 206
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 2.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 101 THTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVP 208
+ T+H +P + T ++ P AV+ PQ V+ P
Sbjct: 315 SETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 207 PYLNPTRSTSQWSNLS 254
P+LN S S+WSN+S
Sbjct: 352 PHLNDESSRSRWSNIS 367
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.2 bits (50), Expect = 3.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 229 DRVGLRYGHLHVLRDR 182
D GLRYGHL ++ D+
Sbjct: 568 DVKGLRYGHLMIMTDQ 583
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 24.2 bits (50), Expect = 3.2
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 89 PEGHTHTEHTKPYHVTV-VKKIGVPIPHPV-AVSVPQYVKVPIPQ 217
P+ H H +V + VP P P +VS P Y P+PQ
Sbjct: 271 PQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQ 315
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.2 bits (50), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 68 RPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPH--PVAVSVPQYVKVPIPQPYPVHVTV 241
RP+ PE + + +P V + + VP P PVA VP + P+ P +V
Sbjct: 547 RPAAPVVPEAPSVPQ--RPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSV 604
Query: 242 EQP 250
QP
Sbjct: 605 PQP 607
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 24.2 bits (50), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 208 GHLHVLRDRHSHRMGNRNSDLLH 140
G HVL+D+ + R+GN + LH
Sbjct: 92 GVSHVLQDKETLRIGNVQIEALH 114
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.2 bits (50), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 155 VPIPHPVAVSVPQYVKVPIPQPYPVHVTVE 244
VP P P P+ ++P P P ++V++E
Sbjct: 592 VPTPVPGRTLSPKPTRIPTPIPSSLNVSLE 621
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 23.8 bits (49), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 202 LHVLRDRHSHRMGNRNSDLLHHGHMVRLR 116
L ++ HS N +LL G +VRLR
Sbjct: 358 LWIIEHEHSQDNNRSNIELLKDGSVVRLR 386
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 4.3
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 119 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQ-PYPVH 232
+P + P+P +A+ P Y P+ Q YPV+
Sbjct: 8 QPISTPSASVVTAPLPATIALPSPNYYYPPVAQGHYPVN 46
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 23.8 bits (49), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 161 IPHPVAVSVPQYVKVPIPQP 220
IPHPV + Q VK+ +P
Sbjct: 376 IPHPVGLYAEQAVKIKTKEP 395
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 23.8 bits (49), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 200 SRTAGPTQPPDGESELRSSSPRSH 129
S+TAG P D SE+ S+S S+
Sbjct: 348 SKTAGSINPEDSGSEIGSNSLESN 371
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 23.8 bits (49), Expect = 4.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 185 PTQPPDGESELRSSSPRS 132
P PP S+L SS+P S
Sbjct: 216 PVAPPSASSQLNSSNPSS 233
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 4.3
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +2
Query: 68 RPSEEWEPEGHTHTEHTKPYHVT---VVKKIGVPIPHPVAVSVPQYVKVPIPQPYPV 229
+PSE + E T EH KP T GVP+ + V +P PV
Sbjct: 275 KPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPEPV 331
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 68 RPSEEWEPEGHTHTEHTKPYHVT 136
R EEW PE E + YH T
Sbjct: 303 RKIEEWLPEAQVKRETSDCYHET 325
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 153 PIFFTTVTWYGFVCS 109
P FT WY F+CS
Sbjct: 244 PSLFTGSIWYEFLCS 258
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 23.0 bits (47), Expect = 7.5
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 1 SVRQHDRF*NNSRPSLSSARQRSAF*RMGARRPHAHRTHEAVPCDRGEEDRSSDSPSGGC 180
S +D N+ P L++A A + + + THE RG+E +S S S
Sbjct: 50 SAVDYDNASGNAAPRLTAAPNTHAQ-QANLQSGNTSITHETQSTSRGQEATTSPSLSASH 108
Query: 181 VGPA 192
PA
Sbjct: 109 EKPA 112
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 23.0 bits (47), Expect = 7.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 SEEWEPEGHTHTEHTKPYHVTVVKKI-GVPIPHPVAVS-VPQYVKVP 208
SE EPE HT +++ + H T K I PI H + + P Y K+P
Sbjct: 189 SEHNEPEYHTESKNEESEHNT--KSIREEPIHHVDSKNEEPVYSKIP 233
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 23.0 bits (47), Expect = 7.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 171 GWGIGTPIFFTTVTWYGFVCSVCVWPSG 88
GW G +F +T Y VC+ PSG
Sbjct: 302 GWITGNSLFIDRITRYAEVCTES--PSG 327
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 23.0 bits (47), Expect = 7.5
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 86 EPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQ 217
+P T T + + K + P V SVP + PIPQ
Sbjct: 449 KPNSPTSTFFPQSSFGQTIAKNTMDKPSAVRTSVPSQLAAPIPQ 492
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 87 SHSSEGRALASATKRRTTVVLKA 19
++ ++ + L + K+R TVVLKA
Sbjct: 1335 NYENDKQTLEGSNKKRQTVVLKA 1357
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 127 PCDRGEEDRS 156
PC RG EDRS
Sbjct: 151 PCSRGAEDRS 160
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 22.6 bits (46), Expect = 9.9
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = +1
Query: 109 RTHEAVPCDRGEEDRSSDSPSGGCVGPAVREGAHTSTLPGPRHSGATYPV 258
R + A RSS+SP+G G H + + +YPV
Sbjct: 84 RRNAAAAAAANNSARSSNSPAGNLEPSTNNAGVHMTNASMNPNVNPSYPV 133
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 22.6 bits (46), Expect = 9.9
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 176 PPDGES-ELRSSSPRSHGTASCVLCAC 99
P D E + R+ + G C+LCAC
Sbjct: 144 PKDKEFYQSRADRAKLDGLYECILCAC 170
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 178 SHRMGNRNSDLLHHGHMVRLRVFCVRVAFGLPFFRR 71
SH +R ++++HGH R V +V G +++R
Sbjct: 1050 SHGFQSRGFEVMYHGHTGRKLV--AQVFLGPTYYQR 1083
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 180 CRSRST*RCPYLNPT 224
C ST CPYL PT
Sbjct: 404 CNPASTILCPYLFPT 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,749
Number of Sequences: 5004
Number of extensions: 24355
Number of successful extensions: 99
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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