Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0881
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   2.3  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   2.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.1  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.4  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    25   7.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    24   9.5  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    24   9.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   9.5  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 172 RTSTPNDKSLLVTPKDERSASKQK--NKPGRSST 77
           R S   +K++L TP D+  A K+K  N  GR+S+
Sbjct: 6   RLSDEINKAILATPLDDDEADKEKLANARGRASS 39


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 437 VDDEKSDKKITQKIRAIKDYQRSKRKNQRTVITPI 333
           V DEK  + + +K+RAI D +     N++   T +
Sbjct: 520 VSDEKKIRSLCKKLRAIDDLKSRLNNNEKLEATQV 554


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +1

Query: 43  HVYSCFPCFVSLWSSCLVYFFVLMRIFHLLASP 141
           H+Y C+    S+W+   +  + L    H++  P
Sbjct: 63  HIYDCYKTNESVWNVLSIITYFLALFLHVVEQP 95


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 49 YSCFPCFVSLWSSCLVY 99
          Y+CFP F+S + S L Y
Sbjct: 38 YNCFPGFISSFHSLLTY 54


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 449 KKKRVDDEKSDKKITQKIRAIKDYQRSKRK 360
           KKK VDDEK  ++I ++ R      R K+K
Sbjct: 4   KKKEVDDEKR-RRILERNRIAASKFRQKKK 32


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 411 DNTKDTSNKGLPKIKKKEPENG 346
           ++  D SN  L   +KK PENG
Sbjct: 461 EHVGDVSNDSLAFAEKKHPENG 482


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 434 DDEKSDKKITQKIRAIKDYQRSKRKNQRTVITP 336
           +  +SD +I +K +  K   + K+KN+R  I P
Sbjct: 426 EQSQSDYEIDKKKKKKKKNNKKKKKNKRKNIKP 458


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 184 RDSPRTSTPNDKSL-----LVTPKDERSASKQKNKPGRSSTER 71
           R++ ++ST ND ++     ++ P     A    NKP  SST +
Sbjct: 337 RENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTK 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,827
Number of Sequences: 5004
Number of extensions: 27134
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)