BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0881 (454 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 2.3 SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 2.3 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 3.1 SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 5.4 SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 25 7.2 SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 24 9.5 SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 24 9.5 SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 9.5 >SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces pombe|chr 2|||Manual Length = 476 Score = 26.2 bits (55), Expect = 2.3 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = -1 Query: 172 RTSTPNDKSLLVTPKDERSASKQK--NKPGRSST 77 R S +K++L TP D+ A K+K N GR+S+ Sbjct: 6 RLSDEINKAILATPLDDDEADKEKLANARGRASS 39 >SPBC4B4.04 |||translation initiation factor eIF2A |Schizosaccharomyces pombe|chr 2|||Manual Length = 576 Score = 26.2 bits (55), Expect = 2.3 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -3 Query: 437 VDDEKSDKKITQKIRAIKDYQRSKRKNQRTVITPI 333 V DEK + + +K+RAI D + N++ T + Sbjct: 520 VSDEKKIRSLCKKLRAIDDLKSRLNNNEKLEATQV 554 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.8 bits (54), Expect = 3.1 Identities = 8/33 (24%), Positives = 16/33 (48%) Frame = +1 Query: 43 HVYSCFPCFVSLWSSCLVYFFVLMRIFHLLASP 141 H+Y C+ S+W+ + + L H++ P Sbjct: 63 HIYDCYKTNESVWNVLSIITYFLALFLHVVEQP 95 >SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 75 Score = 25.0 bits (52), Expect = 5.4 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +1 Query: 49 YSCFPCFVSLWSSCLVY 99 Y+CFP F+S + S L Y Sbjct: 38 YNCFPGFISSFHSLLTY 54 >SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 171 Score = 24.6 bits (51), Expect = 7.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 449 KKKRVDDEKSDKKITQKIRAIKDYQRSKRK 360 KKK VDDEK ++I ++ R R K+K Sbjct: 4 KKKEVDDEKR-RRILERNRIAASKFRQKKK 32 >SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces pombe|chr 2|||Manual Length = 1112 Score = 24.2 bits (50), Expect = 9.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -2 Query: 411 DNTKDTSNKGLPKIKKKEPENG 346 ++ D SN L +KK PENG Sbjct: 461 EHVGDVSNDSLAFAEKKHPENG 482 >SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 24.2 bits (50), Expect = 9.5 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -3 Query: 434 DDEKSDKKITQKIRAIKDYQRSKRKNQRTVITP 336 + +SD +I +K + K + K+KN+R I P Sbjct: 426 EQSQSDYEIDKKKKKKKKNNKKKKKNKRKNIKP 458 >SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 710 Score = 24.2 bits (50), Expect = 9.5 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -1 Query: 184 RDSPRTSTPNDKSL-----LVTPKDERSASKQKNKPGRSSTER 71 R++ ++ST ND ++ ++ P A NKP SST + Sbjct: 337 RENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTK 379 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,531,827 Number of Sequences: 5004 Number of extensions: 27134 Number of successful extensions: 96 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 95 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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