Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0881
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0397 - 3509186-3510291,3510322-3512335                           29   1.3  
09_01_0125 - 1878965-1879084,1879173-1879271,1879488-1879598           29   2.3  
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98...    27   5.3  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    27   5.3  
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436...    27   5.3  
03_02_0438 + 8470290-8470378,8470900-8470990,8471074-8471134,847...    27   7.1  
11_06_0710 - 26492093-26493460                                         27   9.3  
10_01_0073 - 955746-955758,955811-956832                               27   9.3  
10_01_0072 - 918323-918335,918388-919409                               27   9.3  

>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 452 EKKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRT 348
           +KKK  + ++ D+++  + R IK++Q  KR+ + T
Sbjct: 159 QKKKEEEQKQLDEEMETRRRRIKEWQEMKRREEET 193


>09_01_0125 - 1878965-1879084,1879173-1879271,1879488-1879598
          Length = 109

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 452 EKKKRVDDEKSDKKITQKIRAI-KDYQRSKRKNQRTVITPI 333
           ++ K+  ++  D   +QK  AI K  Q+ K+K +RTV++PI
Sbjct: 47  QELKQYKEQNKDMFNSQKKAAINKIQQKEKKKRKRTVLSPI 87


>10_01_0075 -
           979335-979954,980136-980405,980949-980989,981563-981663
          Length = 343

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 115 RIFHLLASPEEIYRWGC*FWESLWC 189
           RI     +P++ YRWG   W+S  C
Sbjct: 253 RICSCTGAPQQRYRWGAGGWQSACC 277


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 120 DPHQNKKINQAGAPQRDKAGK 58
           DPH NK +  + +PQ  +AGK
Sbjct: 219 DPHANKLVTSSDSPQEVEAGK 239


>07_03_1777 +
           29442542-29442652,29443394-29443455,29443540-29443681,
           29444043-29444261,29444374-29444440,29444883-29445288,
           29445669-29445816,29445903-29446063,29446320-29446419,
           29446522-29446596,29446677-29446811,29446921-29447013,
           29447475-29447657,29447738-29447842,29448614-29448772,
           29449142-29449186,29449296-29449517,29449775-29449881,
           29449971-29450027,29450132-29450213,29450291-29450455
          Length = 947

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 7   SGICYFWNSFSFHVYSCFPCFVSLWSSC 90
           S +CY +   SF     F C  + W+ C
Sbjct: 502 SSLCYLFQESSFSELDLFECLPTCWTMC 529


>03_02_0438 +
           8470290-8470378,8470900-8470990,8471074-8471134,
           8471678-8471755,8471891-8471964,8472689-8472802,
           8472881-8472988,8473937-8473975,8474046-8474132
          Length = 246

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 449 KKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVITP 336
           KKKR  +EK ++   Q++ + +D+ ++ +K ++  I P
Sbjct: 189 KKKREHEEKWEETRDQRVSSWRDFMKTGKKARKGEIKP 226


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 452 EKKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQR 351
           +K K  DD++ DKK ++K  + +D   +K+K ++
Sbjct: 179 KKPKNPDDDEDDKKKSKKKSSDEDNDGAKKKKKK 212


>10_01_0073 - 955746-955758,955811-956832
          Length = 344

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 136 SPEEIYRWGC*FWESLWC 189
           +P++ YRWG   W+S  C
Sbjct: 258 APQQCYRWGAGGWQSACC 275


>10_01_0072 - 918323-918335,918388-919409
          Length = 344

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 136 SPEEIYRWGC*FWESLWC 189
           +P++ YRWG   W+S  C
Sbjct: 258 APQQCYRWGAGGWQSACC 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,559
Number of Sequences: 37544
Number of extensions: 153176
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)