Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0881
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0) 33 0.15
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 29 1.8
SB_39195| Best HMM Match : DUF374 (HMM E-Value=8.6) 28 3.1
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4) 28 3.1
SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8243| Best HMM Match : DUF592 (HMM E-Value=2.3) 28 4.2
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 27 7.3
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09) 27 9.6
SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_9696| Best HMM Match : Adeno_VII (HMM E-Value=3) 27 9.6
>SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 459
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 1 YRSGICYFWNSFSFHVYS---CFPCFVSLWSS-CLVYFFVLMRIFHLLASPEEIYRWG 162
Y++GI Y WN +SF+ ++ + WS+ C F + L PE+I R G
Sbjct: 330 YKTGILYRWNKYSFYAWAWNIVGLLAIMAWSAGCAALMFGFCHLIGKLRVPEDIERKG 387
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 193 CGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92
C RDSP + P D P+D S+ ++ P
Sbjct: 177 CNVRDSPSSRNPRDSPASRNPRDSPSSRNPRDSP 210
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 193 CGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92
C RDSP + P D P+D S+ ++ P
Sbjct: 150 CNVRDSPSSRNPRDSPASRNPRDSPSSCNVRDSP 183
>SB_39195| Best HMM Match : DUF374 (HMM E-Value=8.6)
Length = 209
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 73 SLWSSCLVYFFVLMRIFHLLAS 138
SLW+ CLV F+ + R HL A+
Sbjct: 130 SLWAICLVAFYCMFRKSHLFAN 151
>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
Length = 160
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 449 KKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRT 348
K + ++ ++ KK+T++I+ IK R KRK + +
Sbjct: 35 KIRSIERQRQIKKLTKRIKRIKALNRGKRKKKHS 68
>SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1650
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 217 ISVRLRNLCGTRDSPRTSTPNDKSLLVT 134
+S ++NL GTRDS + P+ KS+ VT
Sbjct: 705 LSYGIKNLSGTRDSEKFVYPDIKSVRVT 732
>SB_8243| Best HMM Match : DUF592 (HMM E-Value=2.3)
Length = 372
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 217 ISVRLRNLCGTRDSPRTSTPNDKSLLVT 134
+S ++NL GTRDS + P+ KS+ VT
Sbjct: 225 LSYGIKNLSGTRDSEKFVYPDIKSVRVT 252
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 208 RLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSST 77
R R+L GT+ S R STPN +S S ++ G+ ST
Sbjct: 814 RPRSLVGTKRSQRLSTPNQESAKAITAKCDSPQHAVDEDGKPST 857
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 214 SVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92
+ R R + +TS P +K PK R AS++ NKP
Sbjct: 1193 AARPRQASSKTKTSKTSKPQNKQA-ARPKQARQASRKTNKP 1232
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = -3
Query: 452 EKKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVIT 339
+K+K + DE+ D+K+ + +++ + +RK+Q + T
Sbjct: 950 QKEKEMVDEEQDRKVKDAEKDLEEVKLERRKHQEELET 987
>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
Length = 525
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 448 KKSESMMKNLIKR*HKRYEQ*RITKDQKERTRERL 344
K++ K ++R KR E R K+Q++R RER+
Sbjct: 451 KRAREEEKARVEREKKRVEDERWMKEQEQRRRERM 485
>SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 446 KKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVITP 336
KK +DD+ D+K T D Q +K+K RT TP
Sbjct: 70 KKNLDDQDDDRKST-------DSQAAKQKRHRTRFTP 99
>SB_9696| Best HMM Match : Adeno_VII (HMM E-Value=3)
Length = 185
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 208 RLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTERQ 68
R R L T+D R T ++L VTP + R + +K + ER+
Sbjct: 118 RKRALSVTQDERRDETGRKRALSVTPDERRDETGRKRALSVTPDERR 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,953
Number of Sequences: 59808
Number of extensions: 182129
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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