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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0881
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0)             33   0.15 
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        29   1.8  
SB_39195| Best HMM Match : DUF374 (HMM E-Value=8.6)                    28   3.1  
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)             28   3.1  
SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_8243| Best HMM Match : DUF592 (HMM E-Value=2.3)                     28   4.2  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.2  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  27   7.3  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)           27   9.6  
SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_9696| Best HMM Match : Adeno_VII (HMM E-Value=3)                    27   9.6  

>SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 459

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 1   YRSGICYFWNSFSFHVYS---CFPCFVSLWSS-CLVYFFVLMRIFHLLASPEEIYRWG 162
           Y++GI Y WN +SF+ ++        +  WS+ C    F    +   L  PE+I R G
Sbjct: 330 YKTGILYRWNKYSFYAWAWNIVGLLAIMAWSAGCAALMFGFCHLIGKLRVPEDIERKG 387


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 193 CGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92
           C  RDSP +  P D      P+D  S+   ++ P
Sbjct: 177 CNVRDSPSSRNPRDSPASRNPRDSPSSRNPRDSP 210



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 193 CGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92
           C  RDSP +  P D      P+D  S+   ++ P
Sbjct: 150 CNVRDSPSSRNPRDSPASRNPRDSPSSCNVRDSP 183


>SB_39195| Best HMM Match : DUF374 (HMM E-Value=8.6)
          Length = 209

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 73  SLWSSCLVYFFVLMRIFHLLAS 138
           SLW+ CLV F+ + R  HL A+
Sbjct: 130 SLWAICLVAFYCMFRKSHLFAN 151


>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
          Length = 160

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 449 KKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRT 348
           K + ++ ++  KK+T++I+ IK   R KRK + +
Sbjct: 35  KIRSIERQRQIKKLTKRIKRIKALNRGKRKKKHS 68


>SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1650

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 217 ISVRLRNLCGTRDSPRTSTPNDKSLLVT 134
           +S  ++NL GTRDS +   P+ KS+ VT
Sbjct: 705 LSYGIKNLSGTRDSEKFVYPDIKSVRVT 732


>SB_8243| Best HMM Match : DUF592 (HMM E-Value=2.3)
          Length = 372

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 217 ISVRLRNLCGTRDSPRTSTPNDKSLLVT 134
           +S  ++NL GTRDS +   P+ KS+ VT
Sbjct: 225 LSYGIKNLSGTRDSEKFVYPDIKSVRVT 252


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 208 RLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSST 77
           R R+L GT+ S R STPN +S         S     ++ G+ ST
Sbjct: 814 RPRSLVGTKRSQRLSTPNQESAKAITAKCDSPQHAVDEDGKPST 857


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 214  SVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92
            + R R       + +TS P +K     PK  R AS++ NKP
Sbjct: 1193 AARPRQASSKTKTSKTSKPQNKQA-ARPKQARQASRKTNKP 1232


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 452  EKKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVIT 339
            +K+K + DE+ D+K+    + +++ +  +RK+Q  + T
Sbjct: 950  QKEKEMVDEEQDRKVKDAEKDLEEVKLERRKHQEELET 987


>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
          Length = 525

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 448 KKSESMMKNLIKR*HKRYEQ*RITKDQKERTRERL 344
           K++    K  ++R  KR E  R  K+Q++R RER+
Sbjct: 451 KRAREEEKARVEREKKRVEDERWMKEQEQRRRERM 485


>SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 446 KKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVITP 336
           KK +DD+  D+K T       D Q +K+K  RT  TP
Sbjct: 70  KKNLDDQDDDRKST-------DSQAAKQKRHRTRFTP 99


>SB_9696| Best HMM Match : Adeno_VII (HMM E-Value=3)
          Length = 185

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 208 RLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTERQ 68
           R R L  T+D  R  T   ++L VTP + R  + +K     +  ER+
Sbjct: 118 RKRALSVTQDERRDETGRKRALSVTPDERRDETGRKRALSVTPDERR 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,953
Number of Sequences: 59808
Number of extensions: 182129
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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