BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0881 (454 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0) 33 0.15 SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 29 1.8 SB_39195| Best HMM Match : DUF374 (HMM E-Value=8.6) 28 3.1 SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4) 28 3.1 SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_8243| Best HMM Match : DUF592 (HMM E-Value=2.3) 28 4.2 SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 27 7.3 SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09) 27 9.6 SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_9696| Best HMM Match : Adeno_VII (HMM E-Value=3) 27 9.6 >SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0) Length = 459 Score = 32.7 bits (71), Expect = 0.15 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 1 YRSGICYFWNSFSFHVYS---CFPCFVSLWSS-CLVYFFVLMRIFHLLASPEEIYRWG 162 Y++GI Y WN +SF+ ++ + WS+ C F + L PE+I R G Sbjct: 330 YKTGILYRWNKYSFYAWAWNIVGLLAIMAWSAGCAALMFGFCHLIGKLRVPEDIERKG 387 >SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) Length = 582 Score = 29.1 bits (62), Expect = 1.8 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -1 Query: 193 CGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92 C RDSP + P D P+D S+ ++ P Sbjct: 177 CNVRDSPSSRNPRDSPASRNPRDSPSSRNPRDSP 210 Score = 28.7 bits (61), Expect = 2.4 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -1 Query: 193 CGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92 C RDSP + P D P+D S+ ++ P Sbjct: 150 CNVRDSPSSRNPRDSPASRNPRDSPSSCNVRDSP 183 >SB_39195| Best HMM Match : DUF374 (HMM E-Value=8.6) Length = 209 Score = 28.3 bits (60), Expect = 3.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 73 SLWSSCLVYFFVLMRIFHLLAS 138 SLW+ CLV F+ + R HL A+ Sbjct: 130 SLWAICLVAFYCMFRKSHLFAN 151 >SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4) Length = 160 Score = 28.3 bits (60), Expect = 3.1 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -3 Query: 449 KKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRT 348 K + ++ ++ KK+T++I+ IK R KRK + + Sbjct: 35 KIRSIERQRQIKKLTKRIKRIKALNRGKRKKKHS 68 >SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1650 Score = 27.9 bits (59), Expect = 4.2 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -1 Query: 217 ISVRLRNLCGTRDSPRTSTPNDKSLLVT 134 +S ++NL GTRDS + P+ KS+ VT Sbjct: 705 LSYGIKNLSGTRDSEKFVYPDIKSVRVT 732 >SB_8243| Best HMM Match : DUF592 (HMM E-Value=2.3) Length = 372 Score = 27.9 bits (59), Expect = 4.2 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -1 Query: 217 ISVRLRNLCGTRDSPRTSTPNDKSLLVT 134 +S ++NL GTRDS + P+ KS+ VT Sbjct: 225 LSYGIKNLSGTRDSEKFVYPDIKSVRVT 252 >SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1396 Score = 27.9 bits (59), Expect = 4.2 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 208 RLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSST 77 R R+L GT+ S R STPN +S S ++ G+ ST Sbjct: 814 RPRSLVGTKRSQRLSTPNQESAKAITAKCDSPQHAVDEDGKPST 857 >SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) Length = 1281 Score = 27.1 bits (57), Expect = 7.3 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 214 SVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKP 92 + R R + +TS P +K PK R AS++ NKP Sbjct: 1193 AARPRQASSKTKTSKTSKPQNKQA-ARPKQARQASRKTNKP 1232 >SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1711 Score = 27.1 bits (57), Expect = 7.3 Identities = 10/38 (26%), Positives = 24/38 (63%) Frame = -3 Query: 452 EKKKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVIT 339 +K+K + DE+ D+K+ + +++ + +RK+Q + T Sbjct: 950 QKEKEMVDEEQDRKVKDAEKDLEEVKLERRKHQEELET 987 >SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09) Length = 525 Score = 26.6 bits (56), Expect = 9.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 448 KKSESMMKNLIKR*HKRYEQ*RITKDQKERTRERL 344 K++ K ++R KR E R K+Q++R RER+ Sbjct: 451 KRAREEEKARVEREKKRVEDERWMKEQEQRRRERM 485 >SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 307 Score = 26.6 bits (56), Expect = 9.6 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 446 KKRVDDEKSDKKITQKIRAIKDYQRSKRKNQRTVITP 336 KK +DD+ D+K T D Q +K+K RT TP Sbjct: 70 KKNLDDQDDDRKST-------DSQAAKQKRHRTRFTP 99 >SB_9696| Best HMM Match : Adeno_VII (HMM E-Value=3) Length = 185 Score = 26.6 bits (56), Expect = 9.6 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -1 Query: 208 RLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTERQ 68 R R L T+D R T ++L VTP + R + +K + ER+ Sbjct: 118 RKRALSVTQDERRDETGRKRALSVTPDERRDETGRKRALSVTPDERR 164 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,927,953 Number of Sequences: 59808 Number of extensions: 182129 Number of successful extensions: 646 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 643 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 908427626 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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