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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0881
         (454 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain contai...    29   5.6  
DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat ...    29   5.6  
DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein.     29   5.6  
DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein.     29   5.6  
DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein.     29   5.6  
Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein.                  29   7.4  
AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific prot...    29   7.4  

>Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain
           containing protein  ).).
          Length = 2193

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD+PR S+P   S  +  ++ R++  Q++ P  SS  R
Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541



 Score = 29.1 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
           R +R S+ N  T       R  C  RD+PR S+PN  +   +P   R++  +++ P  SS
Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490

Query: 79  TER 71
             R
Sbjct: 491 PNR 493



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD PR S+PN  +    P   R++  +++ P  SS  R
Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565


>DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat on
           actin protein.
          Length = 2266

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD+PR S+P   S  +  ++ R++  Q++ P  SS  R
Sbjct: 673 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 713



 Score = 29.1 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
           R +R S+ N  T       R  C  RD+PR S+PN  +   +P   R++  +++ P  SS
Sbjct: 609 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 662

Query: 79  TER 71
             R
Sbjct: 663 PNR 665



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD PR S+PN  +    P   R++  +++ P  SS  R
Sbjct: 697 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 737


>DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein.
          Length = 2365

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD+PR S+P   S  +  ++ R++  Q++ P  SS  R
Sbjct: 673 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 713



 Score = 29.1 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
           R +R S+ N  T       R  C  RD+PR S+PN  +   +P   R++  +++ P  SS
Sbjct: 609 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 662

Query: 79  TER 71
             R
Sbjct: 663 PNR 665



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD PR S+PN  +    P   R++  +++ P  SS  R
Sbjct: 697 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 737


>DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein.
          Length = 1144

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD+PR S+P   S  +  ++ R++  Q++ P  SS  R
Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541



 Score = 29.1 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
           R +R S+ N  T       R  C  RD+PR S+PN  +   +P   R++  +++ P  SS
Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490

Query: 79  TER 71
             R
Sbjct: 491 PNR 493



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD PR S+PN  +    P   R++  +++ P  SS  R
Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565


>DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein.
          Length = 2193

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD+PR S+P   S  +  ++ R++  Q++ P  SS  R
Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541



 Score = 29.1 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
           R +R S+ N  T       R  C  RD+PR S+PN  +   +P   R++  +++ P  SS
Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490

Query: 79  TER 71
             R
Sbjct: 491 PNR 493



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
           R  C  RD PR S+PN  +    P   R++  +++ P  SS  R
Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565


>Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein.
          Length = 2555

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 28   NSFSFHVYSCFPCFVSLWSSCLVYFFVL 111
            N +    Y C  C V+L+SSC V + +L
Sbjct: 2379 NHYQKRAYQCIKCMVALFSSCPVAYQIL 2406


>AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific protease
            9 protein.
          Length = 2555

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 28   NSFSFHVYSCFPCFVSLWSSCLVYFFVL 111
            N +    Y C  C V+L+SSC V + +L
Sbjct: 2379 NHYQKRAYQCIKCMVALFSSCPVAYQIL 2406


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,494,118
Number of Sequences: 237096
Number of extensions: 920384
Number of successful extensions: 6360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6309
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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