Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0881
(454 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain contai... 29 5.6
DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat ... 29 5.6
DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein. 29 5.6
DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein. 29 5.6
DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein. 29 5.6
Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein. 29 7.4
AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific prot... 29 7.4
>Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain
containing protein ).).
Length = 2193
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD+PR S+P S + ++ R++ Q++ P SS R
Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541
Score = 29.1 bits (62), Expect = 7.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS
Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490
Query: 79 TER 71
R
Sbjct: 491 PNR 493
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD PR S+PN + P R++ +++ P SS R
Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565
>DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat on
actin protein.
Length = 2266
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD+PR S+P S + ++ R++ Q++ P SS R
Sbjct: 673 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 713
Score = 29.1 bits (62), Expect = 7.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS
Sbjct: 609 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 662
Query: 79 TER 71
R
Sbjct: 663 PNR 665
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD PR S+PN + P R++ +++ P SS R
Sbjct: 697 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 737
>DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein.
Length = 2365
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD+PR S+P S + ++ R++ Q++ P SS R
Sbjct: 673 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 713
Score = 29.1 bits (62), Expect = 7.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS
Sbjct: 609 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 662
Query: 79 TER 71
R
Sbjct: 663 PNR 665
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD PR S+PN + P R++ +++ P SS R
Sbjct: 697 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 737
>DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein.
Length = 1144
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD+PR S+P S + ++ R++ Q++ P SS R
Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541
Score = 29.1 bits (62), Expect = 7.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS
Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490
Query: 79 TER 71
R
Sbjct: 491 PNR 493
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD PR S+PN + P R++ +++ P SS R
Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565
>DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein.
Length = 2193
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD+PR S+P S + ++ R++ Q++ P SS R
Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541
Score = 29.1 bits (62), Expect = 7.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80
R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS
Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490
Query: 79 TER 71
R
Sbjct: 491 PNR 493
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71
R C RD PR S+PN + P R++ +++ P SS R
Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565
>Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein.
Length = 2555
Score = 29.1 bits (62), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 28 NSFSFHVYSCFPCFVSLWSSCLVYFFVL 111
N + Y C C V+L+SSC V + +L
Sbjct: 2379 NHYQKRAYQCIKCMVALFSSCPVAYQIL 2406
>AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific protease
9 protein.
Length = 2555
Score = 29.1 bits (62), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 28 NSFSFHVYSCFPCFVSLWSSCLVYFFVL 111
N + Y C C V+L+SSC V + +L
Sbjct: 2379 NHYQKRAYQCIKCMVALFSSCPVAYQIL 2406
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,494,118
Number of Sequences: 237096
Number of extensions: 920384
Number of successful extensions: 6360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6309
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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