BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0881 (454 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain contai... 29 5.6 DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat ... 29 5.6 DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein. 29 5.6 DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein. 29 5.6 DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein. 29 5.6 Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein. 29 7.4 AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific prot... 29 7.4 >Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain containing protein ).). Length = 2193 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD+PR S+P S + ++ R++ Q++ P SS R Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541 Score = 29.1 bits (62), Expect = 7.4 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -1 Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80 R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490 Query: 79 TER 71 R Sbjct: 491 PNR 493 Score = 28.7 bits (61), Expect = 9.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD PR S+PN + P R++ +++ P SS R Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565 >DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat on actin protein. Length = 2266 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD+PR S+P S + ++ R++ Q++ P SS R Sbjct: 673 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 713 Score = 29.1 bits (62), Expect = 7.4 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -1 Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80 R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS Sbjct: 609 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 662 Query: 79 TER 71 R Sbjct: 663 PNR 665 Score = 28.7 bits (61), Expect = 9.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD PR S+PN + P R++ +++ P SS R Sbjct: 697 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 737 >DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein. Length = 2365 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD+PR S+P S + ++ R++ Q++ P SS R Sbjct: 673 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 713 Score = 29.1 bits (62), Expect = 7.4 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -1 Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80 R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS Sbjct: 609 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 662 Query: 79 TER 71 R Sbjct: 663 PNR 665 Score = 28.7 bits (61), Expect = 9.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD PR S+PN + P R++ +++ P SS R Sbjct: 697 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 737 >DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein. Length = 1144 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD+PR S+P S + ++ R++ Q++ P SS R Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541 Score = 29.1 bits (62), Expect = 7.4 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -1 Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80 R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490 Query: 79 TER 71 R Sbjct: 491 PNR 493 Score = 28.7 bits (61), Expect = 9.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD PR S+PN + P R++ +++ P SS R Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565 >DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein. Length = 2193 Score = 29.5 bits (63), Expect = 5.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD+PR S+P S + ++ R++ Q++ P SS R Sbjct: 501 RTSCALRDNPRASSP---SRTIQQENPRTSCAQRDDPRASSPNR 541 Score = 29.1 bits (62), Expect = 7.4 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -1 Query: 259 RTNRHSNKNNIT*YISVRLRNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSS 80 R +R S+ N T R C RD+PR S+PN + +P R++ +++ P SS Sbjct: 437 RASRTSSPNRAT---RDNPRTSCAQRDNPRASSPNRTTQQDSP---RTSCARRDDPRASS 490 Query: 79 TER 71 R Sbjct: 491 PNR 493 Score = 28.7 bits (61), Expect = 9.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -1 Query: 202 RNLCGTRDSPRTSTPNDKSLLVTPKDERSASKQKNKPGRSSTER 71 R C RD PR S+PN + P R++ +++ P SS R Sbjct: 525 RTSCAQRDDPRASSPNRTTQQENP---RTSCARRDNPRASSRNR 565 >Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein. Length = 2555 Score = 29.1 bits (62), Expect = 7.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 28 NSFSFHVYSCFPCFVSLWSSCLVYFFVL 111 N + Y C C V+L+SSC V + +L Sbjct: 2379 NHYQKRAYQCIKCMVALFSSCPVAYQIL 2406 >AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific protease 9 protein. Length = 2555 Score = 29.1 bits (62), Expect = 7.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 28 NSFSFHVYSCFPCFVSLWSSCLVYFFVL 111 N + Y C C V+L+SSC V + +L Sbjct: 2379 NHYQKRAYQCIKCMVALFSSCPVAYQIL 2406 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 51,494,118 Number of Sequences: 237096 Number of extensions: 920384 Number of successful extensions: 6360 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 6027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6309 length of database: 76,859,062 effective HSP length: 84 effective length of database: 56,942,998 effective search space used: 3758237868 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -