Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0880
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.61 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.4  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   4.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   7.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   10.0 
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   10.0 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   10.0 

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 275 YFFQSLPQDQQKSTQTFWPNIILHNYETTTTIW 373
           Y FQSL     K+    W NI++   + + TIW
Sbjct: 605 YIFQSLSPTIVKNDNESWKNIVMELIKASETIW 637


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 621  YNYFKMYCDFFYILNYFISEMFYFNILLFI 532
            Y  F+ YCDF++    F ++  Y  I+ ++
Sbjct: 3460 YKTFERYCDFWFFRRTFTTQYAYMIIMTYV 3489


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 25/102 (24%), Positives = 42/102 (41%)
 Frame = +3

Query: 24  ISNKLVRYIFDSIFWKKKMFRSLCRFISILYGSPVVKLLQESNQTFFQSFLKPNLIHLFP 203
           I    V  + +S+F  KK+  + C   S          LQ S Q F ++ LK   I + P
Sbjct: 303 IKRSSVVSLCNSVFDGKKLTIAKCLLTSSSIKDDTKLQLQISRQPFSKAELKKKTITINP 362

Query: 204 IKTNPIY*DIHYWFQIS*NSINTITFFSPYHKINKNQHKLSG 329
            +   +  D  +W + S  +  T     P   ++K+ + L G
Sbjct: 363 DRY--VLWDHRFWIKYSCKNTQTTLILRPL--LSKDLNSLKG 400


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 SILYGSPVVKLLQESNQTFFQSFLKPNLI 191
           S+ YGS V KLL+++N      FL  N++
Sbjct: 386 SVPYGSRVPKLLEDANNNGLLVFLIANVL 414


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 361  NDDMVILLILYNKNHIVDFKHLKYIIQNGYTY*IL 465
            ND+  I  +L   + IVDF HL + I  G  Y IL
Sbjct: 963  NDESAIFSVL---DDIVDFNHLTWSILFGENYIIL 994


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 451 YSRFE*CILNA*SLQCDFYYIK*VELPY-RRCRFIIMQNNVWP 326
           Y  +E    N  +L   FY +  V+LP+ R+  F++M NN++P
Sbjct: 394 YDYYEHVKNNPNTLISQFYGLHRVKLPFGRKIHFVVM-NNLFP 435


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 356 FHNYAK*CLARKFVLIFVDLVVRTEKSNRV 267
           F N+A     RKFV+ +V L+++ E  +R+
Sbjct: 148 FVNHALCAALRKFVMDYVVLIMQCENQSRI 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,368
Number of Sequences: 5004
Number of extensions: 53818
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)