Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0880
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0059 - 18724619-18725053                                         29   3.4  
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354...    29   4.5  

>11_05_0059 - 18724619-18725053
          Length = 144

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 79  CLEVCADLFRFYMAHPLLSC 138
           CL +C D FRFY+  P+LSC
Sbjct: 101 CLVLCFD-FRFYLQAPVLSC 119


>07_03_1391 +
           26234647-26235026,26235112-26235226,26235345-26235410,
           26235519-26235607,26235717-26235807,26235917-26236063,
           26236160-26236252,26236373-26236474,26236581-26237255
          Length = 585

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 144 ESNQTFFQSFLKPNLIHLFPIKTNPIY*DIHYWFQI 251
           E N   FQ FLK N + L  +K +P   D  +W ++
Sbjct: 340 EENFQEFQGFLKDNNVDLTDVKMSPTEEDEEFWSRL 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,016
Number of Sequences: 37544
Number of extensions: 243040
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)