Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0880
         (675 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003446-1|AAO39449.1|  205|Drosophila melanogaster RH52220p pro...    29   7.7  
AE014298-2154|AAN09354.1|  205|Drosophila melanogaster CG6299-PB...    29   7.7  
AE014298-2153|AAO41657.1|  205|Drosophila melanogaster CG6299-PA...    29   7.7  

>BT003446-1|AAO39449.1|  205|Drosophila melanogaster RH52220p
           protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   FLHDIFYISNKLVRYIFDSIFWKKKMFRSLCRFISILYGSPVVK-LLQESNQTFFQSFLK 179
           +L D+  ++  +  +  +++ W K+  + +C F   +Y     K  L++  Q  ++  LK
Sbjct: 79  YLEDLIVLNVNVDDFAANALLWLKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLK 138

Query: 180 P 182
           P
Sbjct: 139 P 139


>AE014298-2154|AAN09354.1|  205|Drosophila melanogaster CG6299-PB,
           isoform B protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   FLHDIFYISNKLVRYIFDSIFWKKKMFRSLCRFISILYGSPVVK-LLQESNQTFFQSFLK 179
           +L D+  ++  +  +  +++ W K+  + +C F   +Y     K  L++  Q  ++  LK
Sbjct: 79  YLEDLIVLNVNVDDFAANALLWLKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLK 138

Query: 180 P 182
           P
Sbjct: 139 P 139


>AE014298-2153|AAO41657.1|  205|Drosophila melanogaster CG6299-PA,
           isoform A protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   FLHDIFYISNKLVRYIFDSIFWKKKMFRSLCRFISILYGSPVVK-LLQESNQTFFQSFLK 179
           +L D+  ++  +  +  +++ W K+  + +C F   +Y     K  L++  Q  ++  LK
Sbjct: 79  YLEDLIVLNVNVDDFAANALLWLKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLK 138

Query: 180 P 182
           P
Sbjct: 139 P 139


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,932,510
Number of Sequences: 53049
Number of extensions: 471351
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)