Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0880
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    26   0.38 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    26   0.38 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    26   0.38 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.1  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 552 NKTFQK*NSLKYKRNHSTF*NNYK---FGLDYLMKIII 656
           NKT    N+ KY  N++ + NN K   + ++Y+ +I I
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 552 NKTFQK*NSLKYKRNHSTF*NNYK---FGLDYLMKIII 656
           NKT    N+ KY  N++ + NN K   + ++Y+ +I I
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 552 NKTFQK*NSLKYKRNHSTF*NNYK---FGLDYLMKIII 656
           NKT    N+ KY  N++ + NN K   + ++Y+ +I I
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 552 NKTFQK*NSLKYKRNHSTF*NNYK---FGLDYLMKI 650
           N+T    N+ KY  N++ + NN K   + ++Y+ +I
Sbjct: 87  NRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 552 NKTFQK*NSLKYKRNHSTF*NN 617
           NKT    N+ KY  N++ + NN
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNN 341


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 12  DIFYISNKLVRYIFDSIFWKKKMFR 86
           +++ +SNKL  Y++ SI   K  +R
Sbjct: 496 NVWVLSNKLAMYLYGSIDSSKINYR 520


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 228 DIHYWFQIS*NSIN 269
           D H WFQ+S N+ N
Sbjct: 125 DQHKWFQMSINNTN 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,860
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)