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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0879
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.76 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    28   1.0  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   1.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   3.1  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   9.3  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   9.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.3  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   9.3  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 21   STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 149
            + YL   + CIDFFV V++  N ++A    +   SR +   KA
Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +2

Query: 233 ANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 412
           A+E PG++  R +++  + +  TSK+ L+ +  +   +N    +L ++  EP   +  RP
Sbjct: 237 ASELPGSEKERHQSLKLQSQSQTSKNLLAFNDAQKADSNNRDTSLKSHFVEPRT-QALRP 295

Query: 413 SVQ--GRLRQAQDQNPYNLDDMSYSLEEAENMDL 508
             +   +LR+A+          S+  E+   M+L
Sbjct: 296 GARLTYKLREARSSKRGESTPQSFREEDNNLMEL 329


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 102 ENKYIYQSRLWNCIK 146
           ENK++++S  WNC++
Sbjct: 14  ENKFVFRSSSWNCVR 28


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 224 ASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 114
           +S+F S++ T I   N  T + L CSFD +  +  ID
Sbjct: 589 SSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +3

Query: 15  INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 194
           I+S   L+N   I  +++     +EI   ENK+I    L N I++ L   C G+I K   
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452

Query: 195 GDISAPKG 218
             IS  KG
Sbjct: 453 IPISGLKG 460


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = +2

Query: 233 ANEQPGTQLRRPKAVSDEPKVDTSKSKLSADA----KEWYPANYTSQALPAYNTEPAPYR 400
           +N  P   L  P + S       + +  ++      K  +PA+Y+S A    N +   + 
Sbjct: 386 SNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNKSIFPASYSSSAEDGQNMQAPAHA 445

Query: 401 PSRPSVQGRLRQAQDQNPYNLDDMS 475
             + S+ G  ++ + + P NL   S
Sbjct: 446 YMQSSIYGVNQEQKSEYPSNLSMQS 470


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 515 FSLDPCFQLLQVNKTCHPNCMDFDL 441
           F LD    L ++ K CHPN    D+
Sbjct: 843 FKLDETIDLNEIAKNCHPNFTGADM 867


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
 Frame = +2

Query: 218  TRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPY 397
            T P  +   PG  L  P      P   TS + + +       +   S   P+Y+     Y
Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSY 1599

Query: 398  RPSRPSVQGRLRQAQDQNP-YNLDDMSYS 481
             P+ PS           +P Y+    SYS
Sbjct: 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSYS 1628


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 TSQALPAYNTEPAPYRPSRPSVQGRLRQAQD-QNPYNLDDMSYSLEEAENMDLG 511
           +S A P  + EP  Y+P +  +   L    +    Y LD+    L+    +DLG
Sbjct: 373 SSSAAPVDSAEPVAYQPIKKPIDPMLGYPLNVAATYRLDESLLRLQMPSIVDLG 426


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 296 DTSKSKLSADAKEWYP-ANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPY 457
           + +K+K  A+     P A   S +    + +P+ Y  +R      LRQ +D NPY
Sbjct: 41  ELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFENRSRTIMELRQTKDPNPY 95


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +2

Query: 224  PGVANEQPGTQLRRPK-AVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYR 400
            P +A        R P+  V ++P      S  +A +K    AN  S A    N  PAP  
Sbjct: 972  PRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM 1031

Query: 401  PSRPS 415
             +RP+
Sbjct: 1032 QARPN 1036


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 260 RRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAP 394
           RR ++ SDE +     S +S ++   + +  +  + P+  T P P
Sbjct: 320 RRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,853
Number of Sequences: 5004
Number of extensions: 59902
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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