Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0879
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 0.76
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 28 1.0
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 27 1.8
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 3.1
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 3.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.3
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.3
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 9.3
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 21 STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 149
+ YL + CIDFFV V++ N ++A + SR + KA
Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +2
Query: 233 ANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 412
A+E PG++ R +++ + + TSK+ L+ + + +N +L ++ EP + RP
Sbjct: 237 ASELPGSEKERHQSLKLQSQSQTSKNLLAFNDAQKADSNNRDTSLKSHFVEPRT-QALRP 295
Query: 413 SVQ--GRLRQAQDQNPYNLDDMSYSLEEAENMDL 508
+ +LR+A+ S+ E+ M+L
Sbjct: 296 GARLTYKLREARSSKRGESTPQSFREEDNNLMEL 329
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.8
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +3
Query: 102 ENKYIYQSRLWNCIK 146
ENK++++S WNC++
Sbjct: 14 ENKFVFRSSSWNCVR 28
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 224 ASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 114
+S+F S++ T I N T + L CSFD + + ID
Sbjct: 589 SSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.1
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 15 INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 194
I+S L+N I +++ +EI ENK+I L N I++ L C G+I K
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452
Query: 195 GDISAPKG 218
IS KG
Sbjct: 453 IPISGLKG 460
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +2
Query: 233 ANEQPGTQLRRPKAVSDEPKVDTSKSKLSADA----KEWYPANYTSQALPAYNTEPAPYR 400
+N P L P + S + + ++ K +PA+Y+S A N + +
Sbjct: 386 SNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNKSIFPASYSSSAEDGQNMQAPAHA 445
Query: 401 PSRPSVQGRLRQAQDQNPYNLDDMS 475
+ S+ G ++ + + P NL S
Sbjct: 446 YMQSSIYGVNQEQKSEYPSNLSMQS 470
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 515 FSLDPCFQLLQVNKTCHPNCMDFDL 441
F LD L ++ K CHPN D+
Sbjct: 843 FKLDETIDLNEIAKNCHPNFTGADM 867
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Frame = +2
Query: 218 TRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPY 397
T P + PG L P P TS + + + + S P+Y+ Y
Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSY 1599
Query: 398 RPSRPSVQGRLRQAQDQNP-YNLDDMSYS 481
P+ PS +P Y+ SYS
Sbjct: 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSYS 1628
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 353 TSQALPAYNTEPAPYRPSRPSVQGRLRQAQD-QNPYNLDDMSYSLEEAENMDLG 511
+S A P + EP Y+P + + L + Y LD+ L+ +DLG
Sbjct: 373 SSSAAPVDSAEPVAYQPIKKPIDPMLGYPLNVAATYRLDESLLRLQMPSIVDLG 426
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 296 DTSKSKLSADAKEWYP-ANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPY 457
+ +K+K A+ P A S + + +P+ Y +R LRQ +D NPY
Sbjct: 41 ELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFENRSRTIMELRQTKDPNPY 95
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 224 PGVANEQPGTQLRRPK-AVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYR 400
P +A R P+ V ++P S +A +K AN S A N PAP
Sbjct: 972 PRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM 1031
Query: 401 PSRPS 415
+RP+
Sbjct: 1032 QARPN 1036
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 260 RRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAP 394
RR ++ SDE + S +S ++ + + + + P+ T P P
Sbjct: 320 RRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKP 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,853
Number of Sequences: 5004
Number of extensions: 59902
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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