BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0879 (646 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 0.76 SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 28 1.0 SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 27 1.8 SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 3.1 SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 3.1 SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1 SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 4.0 SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.3 SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.3 SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.3 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.3 SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 9.3 >SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 1854 Score = 28.7 bits (61), Expect = 0.76 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 21 STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 149 + YL + CIDFFV V++ N ++A + SR + KA Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050 >SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual Length = 665 Score = 28.3 bits (60), Expect = 1.0 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = +2 Query: 233 ANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 412 A+E PG++ R +++ + + TSK+ L+ + + +N +L ++ EP + RP Sbjct: 237 ASELPGSEKERHQSLKLQSQSQTSKNLLAFNDAQKADSNNRDTSLKSHFVEPRT-QALRP 295 Query: 413 SVQ--GRLRQAQDQNPYNLDDMSYSLEEAENMDL 508 + +LR+A+ S+ E+ M+L Sbjct: 296 GARLTYKLREARSSKRGESTPQSFREEDNNLMEL 329 >SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schizosaccharomyces pombe|chr 2|||Manual Length = 210 Score = 27.5 bits (58), Expect = 1.8 Identities = 7/15 (46%), Positives = 13/15 (86%) Frame = +3 Query: 102 ENKYIYQSRLWNCIK 146 ENK++++S WNC++ Sbjct: 14 ENKFVFRSSSWNCVR 28 >SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 720 Score = 26.6 bits (56), Expect = 3.1 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 224 ASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 114 +S+F S++ T I N T + L CSFD + + ID Sbjct: 589 SSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625 >SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 695 Score = 26.6 bits (56), Expect = 3.1 Identities = 23/68 (33%), Positives = 33/68 (48%) Frame = +3 Query: 15 INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 194 I+S L+N I +++ +EI ENK+I L N I++ L C G+I K Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452 Query: 195 GDISAPKG 218 IS KG Sbjct: 453 IPISGLKG 460 >SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 682 Score = 26.6 bits (56), Expect = 3.1 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Frame = +2 Query: 233 ANEQPGTQLRRPKAVSDEPKVDTSKSKLSADA----KEWYPANYTSQALPAYNTEPAPYR 400 +N P L P + S + + ++ K +PA+Y+S A N + + Sbjct: 386 SNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNKSIFPASYSSSAEDGQNMQAPAHA 445 Query: 401 PSRPSVQGRLRQAQDQNPYNLDDMS 475 + S+ G ++ + + P NL S Sbjct: 446 YMQSSIYGVNQEQKSEYPSNLSMQS 470 >SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 948 Score = 26.2 bits (55), Expect = 4.0 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -3 Query: 515 FSLDPCFQLLQVNKTCHPNCMDFDL 441 F LD L ++ K CHPN D+ Sbjct: 843 FKLDETIDLNEIAKNCHPNFTGADM 867 >SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 1752 Score = 25.8 bits (54), Expect = 5.3 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 1/89 (1%) Frame = +2 Query: 218 TRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPY 397 T P + PG L P P TS + + + + S P+Y+ Y Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSY 1599 Query: 398 RPSRPSVQGRLRQAQDQNP-YNLDDMSYS 481 P+ PS +P Y+ SYS Sbjct: 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSYS 1628 >SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharomyces pombe|chr 2|||Manual Length = 865 Score = 25.0 bits (52), Expect = 9.3 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = +2 Query: 353 TSQALPAYNTEPAPYRPSRPSVQGRLRQAQD-QNPYNLDDMSYSLEEAENMDLG 511 +S A P + EP Y+P + + L + Y LD+ L+ +DLG Sbjct: 373 SSSAAPVDSAEPVAYQPIKKPIDPMLGYPLNVAATYRLDESLLRLQMPSIVDLG 426 >SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 591 Score = 25.0 bits (52), Expect = 9.3 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +2 Query: 296 DTSKSKLSADAKEWYP-ANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPY 457 + +K+K A+ P A S + + +P+ Y +R LRQ +D NPY Sbjct: 41 ELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFENRSRTIMELRQTKDPNPY 95 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 25.0 bits (52), Expect = 9.3 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = +2 Query: 224 PGVANEQPGTQLRRPK-AVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYR 400 P +A R P+ V ++P S +A +K AN S A N PAP Sbjct: 972 PRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM 1031 Query: 401 PSRPS 415 +RP+ Sbjct: 1032 QARPN 1036 >SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 25.0 bits (52), Expect = 9.3 Identities = 11/45 (24%), Positives = 22/45 (48%) Frame = +2 Query: 260 RRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAP 394 RR ++ SDE + S +S ++ + + + + P+ T P P Sbjct: 320 RRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKP 364 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,790,853 Number of Sequences: 5004 Number of extensions: 59902 Number of successful extensions: 183 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 183 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 289756512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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