Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0879
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198...    32   0.45 
04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748     30   1.4  
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945           29   2.4  
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105           29   3.2  
11_03_0055 - 9356602-9356709,9357042-9357221                           29   4.2  
07_01_1012 - 8576196-8576489,8576809-8577045                           28   5.5  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     28   5.5  
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117...    28   7.3  
10_08_0779 - 20497718-20498773                                         27   9.7  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    27   9.7  

>04_04_0235 +
           23819060-23819114,23819486-23819542,23819707-23819808,
           23820162-23820238,23820347-23820470,23820730-23820794,
           23821827-23821896,23822395-23822470,23822597-23822687,
           23822767-23822889
          Length = 279

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 275 VSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS 406
           ++DEP +     KL  D KE   AN TS+A       P P+ P+
Sbjct: 195 LNDEPWLTLLCKKLQLDIKEIIEANKTSEASFCAENSPVPFHPA 238


>04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748
          Length = 373

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 532 TVMCEITFDPG-KFDTLCGPLVDSFA-STLNDESYTR 636
           +V+  I  +PG   D  CGPL+DSFA  TLN    T+
Sbjct: 158 SVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTK 194


>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
          Length = 493

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 354 LLKRYPLTTL-NLPHIDHLAPLY 419
           LL+ +PLT L +L H+DH+ PLY
Sbjct: 290 LLRAHPLTPLVSLHHLDHVYPLY 312


>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
          Length = 430

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 263 RPKAVSDEPKVDTSKSK-LSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQA 439
           +P +    P  ++S S  + A A  + P  YT+  LP Y  +   Y P  PS+Q  L   
Sbjct: 36  QPSSPPPPPPPESSPSHYVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAP 95

Query: 440 QDQN 451
            D +
Sbjct: 96  YDHH 99


>11_03_0055 - 9356602-9356709,9357042-9357221
          Length = 95

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
 Frame = -1

Query: 607 KQMNPPRDHTRCQ-TCP---GQRLS 545
           K+ N PRDH++C+  CP   GQRLS
Sbjct: 55  KKKNEPRDHSQCKPECPWSFGQRLS 79


>07_01_1012 - 8576196-8576489,8576809-8577045
          Length = 176

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 168 RGLIVKMNNGDISAPKGRGRGWQMNNQARSSGGLRQFQTNQRWILLNRSYQQMLKNGTLQ 347
           R  +  M+     + +GR R WQ + + RS  G+R      RW LL R     L++G  +
Sbjct: 28  RRCVRSMSRLSRESDQGRCRSWQASEKPRSC-GIRILCAQLRWRLLGRG--ATLRHGFHR 84

Query: 348 ITLLK 362
           I   K
Sbjct: 85  IATTK 89


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 494 QLLQVNKTCHPNCMDFDLELDEVYLVQRG 408
           ++L V  +C P CM+   +LD++ LV RG
Sbjct: 57  RVLMVLMSCCPICMNLYFDLDDIELVFRG 85


>02_01_0170 -
           1174224-1174321,1174429-1174588,1174673-1174823,
           1175005-1175156,1175647-1175768,1176773-1176785
          Length = 231

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 54  DFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL 155
           DF  Y  ++AN++  YE  + Y   L N ++ ++
Sbjct: 130 DFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSM 163


>10_08_0779 - 20497718-20498773
          Length = 351

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 165 CRGLIVKMNNGDISAPKGRGRGWQMNNQARSSGGLRQFQTNQRWILLNRSYQQMLKNGTL 344
           C  L+ +++  D     G GR W       S+ GL +   +   +LLN S+  +  +   
Sbjct: 84  CVPLLHRVSWADAGGESGVGRAWAWPPSLASTCGLARLSRDDASLLLNGSWVMVAGDSQA 143

Query: 345 QITLL 359
           ++ +L
Sbjct: 144 RLLVL 148


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 530 IKFAMFSLDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCCKRVALEKC 351
           +K ++ SL+ C QL  +     PN ++ DL    + ++  G MV    V C KR+ L  C
Sbjct: 570 VKTSVISLEGCTQLDNLFLRGLPNLVERDLSGCAIKVLDFGTMV--TDVPCLKRLFLLGC 627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,899
Number of Sequences: 37544
Number of extensions: 397968
Number of successful extensions: 1196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)