BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0879 (646 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198... 32 0.45 04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748 30 1.4 08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 29 2.4 03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 29 3.2 11_03_0055 - 9356602-9356709,9357042-9357221 29 4.2 07_01_1012 - 8576196-8576489,8576809-8577045 28 5.5 02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 5.5 02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117... 28 7.3 10_08_0779 - 20497718-20498773 27 9.7 08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 27 9.7 >04_04_0235 + 23819060-23819114,23819486-23819542,23819707-23819808, 23820162-23820238,23820347-23820470,23820730-23820794, 23821827-23821896,23822395-23822470,23822597-23822687, 23822767-23822889 Length = 279 Score = 31.9 bits (69), Expect = 0.45 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +2 Query: 275 VSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS 406 ++DEP + KL D KE AN TS+A P P+ P+ Sbjct: 195 LNDEPWLTLLCKKLQLDIKEIIEANKTSEASFCAENSPVPFHPA 238 >04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748 Length = 373 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 532 TVMCEITFDPG-KFDTLCGPLVDSFA-STLNDESYTR 636 +V+ I +PG D CGPL+DSFA TLN T+ Sbjct: 158 SVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTK 194 >08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 Length = 493 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 354 LLKRYPLTTL-NLPHIDHLAPLY 419 LL+ +PLT L +L H+DH+ PLY Sbjct: 290 LLRAHPLTPLVSLHHLDHVYPLY 312 >03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 Length = 430 Score = 29.1 bits (62), Expect = 3.2 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2 Query: 263 RPKAVSDEPKVDTSKSK-LSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQA 439 +P + P ++S S + A A + P YT+ LP Y + Y P PS+Q L Sbjct: 36 QPSSPPPPPPPESSPSHYVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAP 95 Query: 440 QDQN 451 D + Sbjct: 96 YDHH 99 >11_03_0055 - 9356602-9356709,9357042-9357221 Length = 95 Score = 28.7 bits (61), Expect = 4.2 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%) Frame = -1 Query: 607 KQMNPPRDHTRCQ-TCP---GQRLS 545 K+ N PRDH++C+ CP GQRLS Sbjct: 55 KKKNEPRDHSQCKPECPWSFGQRLS 79 >07_01_1012 - 8576196-8576489,8576809-8577045 Length = 176 Score = 28.3 bits (60), Expect = 5.5 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = +3 Query: 168 RGLIVKMNNGDISAPKGRGRGWQMNNQARSSGGLRQFQTNQRWILLNRSYQQMLKNGTLQ 347 R + M+ + +GR R WQ + + RS G+R RW LL R L++G + Sbjct: 28 RRCVRSMSRLSRESDQGRCRSWQASEKPRSC-GIRILCAQLRWRLLGRG--ATLRHGFHR 84 Query: 348 ITLLK 362 I K Sbjct: 85 IATTK 89 >02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 Length = 258 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 494 QLLQVNKTCHPNCMDFDLELDEVYLVQRG 408 ++L V +C P CM+ +LD++ LV RG Sbjct: 57 RVLMVLMSCCPICMNLYFDLDDIELVFRG 85 >02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823, 1175005-1175156,1175647-1175768,1176773-1176785 Length = 231 Score = 27.9 bits (59), Expect = 7.3 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +3 Query: 54 DFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL 155 DF Y ++AN++ YE + Y L N ++ ++ Sbjct: 130 DFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSM 163 >10_08_0779 - 20497718-20498773 Length = 351 Score = 27.5 bits (58), Expect = 9.7 Identities = 15/65 (23%), Positives = 29/65 (44%) Frame = +3 Query: 165 CRGLIVKMNNGDISAPKGRGRGWQMNNQARSSGGLRQFQTNQRWILLNRSYQQMLKNGTL 344 C L+ +++ D G GR W S+ GL + + +LLN S+ + + Sbjct: 84 CVPLLHRVSWADAGGESGVGRAWAWPPSLASTCGLARLSRDDASLLLNGSWVMVAGDSQA 143 Query: 345 QITLL 359 ++ +L Sbjct: 144 RLLVL 148 >08_02_1186 + 25027498-25029854,25029953-25030564,25031742-25031847, 25032669-25033199 Length = 1201 Score = 27.5 bits (58), Expect = 9.7 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = -3 Query: 530 IKFAMFSLDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCCKRVALEKC 351 +K ++ SL+ C QL + PN ++ DL + ++ G MV V C KR+ L C Sbjct: 570 VKTSVISLEGCTQLDNLFLRGLPNLVERDLSGCAIKVLDFGTMV--TDVPCLKRLFLLGC 627 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,363,899 Number of Sequences: 37544 Number of extensions: 397968 Number of successful extensions: 1196 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1196 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1596695220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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