Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0879
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     36   0.021
SB_16705| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.065
SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)                  30   1.4  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        29   3.2  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               29   4.3  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    29   4.3  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)                   28   7.5  
SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   9.9  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +2

Query: 221  RPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYR 400
            +PG A  +PG    +P+AV  +    ++KS  SA AK   P +  S  L A   EP    
Sbjct: 1641 KPGAATAKPGAASAKPEAVPAKTGAASTKSGPSA-AK---PGSTKSGTLSAKTGEPPSRT 1696

Query: 401  P-SRPSVQGRLRQAQDQNP 454
            P SRP++Q +  + + + P
Sbjct: 1697 PASRPALQKKAEENKPERP 1715



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +2

Query: 209  SKRTRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP 388
            +K T PG +     TQ   P     E +VD +++  S    E+  A    Q  PA   EP
Sbjct: 1457 NKETLPGQSVHIDSTQEEVPVEAQPESRVDQNQTPESLLPAEYLVAPPEEQPAPAAEPEP 1516

Query: 389  AP 394
            +P
Sbjct: 1517 SP 1518


>SB_16705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +2

Query: 215 RTRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSA-----DAKEWYPANYTSQALPAYN 379
           R +PG+  E+PG    +P   ++EP +DT K  +       D +E  P   T +  P+ N
Sbjct: 36  RKKPGLDTEEPGLDTEKPGLNTEEPGLDTEKPGIDTEEPGPDTEE--PGLDTEE--PSLN 91

Query: 380 TEPAPYRPSRPSVQ 421
           TE        PS+Q
Sbjct: 92  TEEPGLCTEEPSIQ 105



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 221 RPGVANEQPGTQLRRPKAVSDEPKVDTSK 307
           +PG+  E+PG     P   ++EP +DT +
Sbjct: 154 KPGLDTEEPGLDTEEPGLDTEEPGLDTEE 182


>SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
 Frame = +2

Query: 224 PGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRP 403
           P   + +P +   RP++ S  P    S+        E  P     Q +      P P   
Sbjct: 115 PRPPSSRPQSAKGRPRSRSGRPMSSQSRGSDIIPDHEMQPKQLQQQCVSFSRYTPLPSIG 174

Query: 404 SRPSVQGRLRQAQDQNPYNLDDMSYSL-EEAENMDLGRT 517
           +RP     + + Q  N  N DD++ +L E+  NM + RT
Sbjct: 175 TRPQTPSGM-ECQTHNTKNSDDVNINLAEKYTNMHIKRT 212


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 323 DAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 466
           D K W+P +  +   P   TEP+ ++P R    G+   AQ  NP N D
Sbjct: 606 DNKAWHPYHGHTVRAPV-ETEPSYHQPPRGQTNGQATNAQRANPINGD 652


>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
          Length = 944

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +2

Query: 209 SKRTRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP 388
           +K T PG +     TQ   P     E +VD +++  S    E+  A    Q  PA   EP
Sbjct: 352 NKETLPGQSVHIDSTQEEVPVEAQPESRVDQNQTPESLLPAEYLVAPPEEQPAPAAEPEP 411

Query: 389 AP 394
           +P
Sbjct: 412 SP 413



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 221 RPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPA-PY 397
           +PG A  +PG    +P+AV  +    ++KS  SA AK     +  SQA    NT PA   
Sbjct: 536 KPGAATAKPGAASAKPEAVPAKTGAASTKSGPSA-AKPGSTKSAKSQA----NTRPASKS 590

Query: 398 RPSRPS 415
            PS P+
Sbjct: 591 TPSGPA 596


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
 Frame = +2

Query: 224  PGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP----- 388
            PG+   QP   L+RP+ V+  PK +  + K  A AK     + T QA P     P     
Sbjct: 2784 PGMMPIQP---LQRPEGVAPSPKPEKPQRKPRARAKS--KDSLTPQASPLPGQGPPADWM 2838

Query: 389  -APYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEE 490
             +P   S+P  + R ++++ Q+  +LDD    L++
Sbjct: 2839 NSPPAASKPGPKPRGKKSKKQS--DLDDPEIQLQQ 2871


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +2

Query: 215 RTRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAP 394
           + +P V +  PG Q       +  P+ D +K+ L    + W P++          T+P P
Sbjct: 148 KPKPSVPSHNPGDQATT-LGTNKNPR-DRAKT-LGTKPQPWGPSHNPQDQAKTLGTKPQP 204

Query: 395 YRPSRPSVQGRLRQAQDQNP 454
           + PS      +      QNP
Sbjct: 205 WGPSHNPRDQQKPSGPSQNP 224


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 308 SKLSADAKEWYPANYTSQALP--AYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 466
           SK S   KEW   +  ++++P   Y  E   Y+ S   + G +     Q  YNLD
Sbjct: 197 SKFSFKTKEWKYVSTQNESVPFPRYRHEAVDYKGSFYVIGGGMGSTDPQEFYNLD 251


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/49 (18%), Positives = 21/49 (42%)
 Frame = -3

Query: 506 DPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCCKRVAL 360
           DPC+   +  K C      +D+++  +Y+      + +G    C  + +
Sbjct: 139 DPCYTAKETTKQCRQYLSVYDIDVSRIYVNYHNHFIMLGFCYRCLSIII 187


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +2

Query: 245 PGTQLRRPKAVSDEPKVDTSKSKLSADAK---EWYPANYTSQALPAYNTEPAPYRPSRPS 415
           P   LR+PK +     V ++KS L           P +  S + P     P P RP +PS
Sbjct: 173 PIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQINMLPEHACSSSHPLTRPIPKPQRPPQPS 232

Query: 416 VQG 424
             G
Sbjct: 233 KSG 235


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +2

Query: 248 GTQLRRPKAVSDEPKVDTSKSK----LSADAKEWYPANY 352
           G+Q R+P+A+S +PK+ TS S+    +S +   W P  Y
Sbjct: 313 GSQ-RKPRAISWQPKLATSASRTPTVVSKEVAVWNPVEY 350


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 224 PGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRP 403
           P   +  P TQ   P      P   +S   ++A      P+ Y   A P+Y   P+ Y P
Sbjct: 187 PPTPSSYPPTQPSYPPTAPSYPPTPSSYPPIAASYPPTAPS-YNPTA-PSYPPTPSSYPP 244

Query: 404 SRPS 415
           ++PS
Sbjct: 245 TQPS 248


>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
          Length = 169

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +2

Query: 221 RPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYR 400
           RPG    +P ++ R      D P    S+S+      E  P+   S+  P Y   P+  R
Sbjct: 22  RPGDGRSRPPSESRPRPPYDDRPP---SESRPRPPYDERPPSE--SRPRPPYERPPSESR 76

Query: 401 PSRPSVQGRLRQAQDQNPYN 460
           P  P    R  + + + PY+
Sbjct: 77  PRPPYDDRRTSETRPRPPYD 96


>SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 102 RRHVFRSQGSTRKQRNLCNSNLVAGR 25
           R  V R  G+T+++ NLC +  V GR
Sbjct: 565 RNPVVRGAGTTKRRENLCYNRKVTGR 590


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
 Frame = +2

Query: 218 TRPGVANEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYT-SQALPAYNTEPAP 394
           T P  +   P      P      P    +    S  +  + P + + S   P+Y+     
Sbjct: 529 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPS 588

Query: 395 YRPSRPSVQGRLRQAQDQNPYNL 463
           Y PS PS    LR      P ++
Sbjct: 589 YSPSSPSFHHNLRPTPPPLPLSI 611


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 236  NEQPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS--R 409
            N+QP +Q  + +  SD+  +    S  +   +     ++T     +   E APY P+  +
Sbjct: 895  NQQPSSQAPQTQQFSDQAYLTNQPSDQALSFQSSKDQSFTFNDQTSQPGEQAPYLPASEQ 954

Query: 410  PSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 505
            PS Q  LR  Q    Y   ++    ++A   D
Sbjct: 955  PSNQA-LRAPQGAVSYASPEVQSEDQQASQQD 985


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,071,487
Number of Sequences: 59808
Number of extensions: 461447
Number of successful extensions: 1283
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)