Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0879
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical ... 29 2.8
L11247-8|AAY86263.1| 196|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 28 4.9
Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z69360-1|CAA93283.1| 390|Caenorhabditis elegans Hypothetical pr... 28 6.5
U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated ... 27 8.6
U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated k... 27 8.6
D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase ... 27 8.6
>Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical
protein T24D5.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = +3
Query: 234 QMN-NQARSSGG-LRQFQTN-QRWILLNRSYQQMLKNGTLQITLLKRYPLTTLNLPHIDH 404
Q+N N+ G LR F T +R + L +S ++L + + I L+ L L + DH
Sbjct: 196 QINQNEGEEMGPILRAFSTEVKRRVYLEKS--EVLDDQPIAIEFLE-LRLGQLLDGNDDH 252
Query: 405 LAPLYKVDFVKLKIKIHTIWMTCLIHLK 488
LY + K+KI++ T+ ++ ++HL+
Sbjct: 253 AVTLYTLMSNKIKIELDTVLLSLILHLE 280
>AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical
protein Y32B12B.5 protein.
Length = 451
Score = 29.1 bits (62), Expect = 2.8
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +2
Query: 575 PCVVPWWIHLLQH 613
PC++P W+H++QH
Sbjct: 124 PCIMPLWLHVIQH 136
>L11247-8|AAY86263.1| 196|Caenorhabditis elegans Hypothetical
protein F09G8.10 protein.
Length = 196
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 248 GTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRPS 415
G RR + +P +T+K L + K + S LPA + P P +P PS
Sbjct: 95 GDNYRRTPSPVRKPTTETTKEDLEPEKKVKFAL--PSPELPASSPPPKPQKPKLPS 148
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = +2
Query: 272 AVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS 406
A S P D S S A W A Y SQA AY+ EPA P+
Sbjct: 507 AASTGPSYDQS-SAAGGYAASW-DAYYASQAQSAYSAEPASTYPT 549
>Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical
protein T06E4.11 protein.
Length = 275
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 242 QPGTQLRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQ 421
Q TQ +P +P S+ +L + A + YP NY P P+ Y P + Q
Sbjct: 72 QDPTQYAQPPQ-QQQPYPYPSQQQLQSQASQGYPQNY-----PQQQPMPSQYSPQQAQQQ 125
Query: 422 GRLRQAQDQNP 454
Q +Q P
Sbjct: 126 LPPSQYPEQGP 136
>Z69360-1|CAA93283.1| 390|Caenorhabditis elegans Hypothetical
protein F25H8.2 protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 323 DAKEWYPANYTSQALPAY--NTEPAPYRPSRPSVQGRLRQAQDQNPY 457
D + +++Q PA N P P +PS P R Q+ + NPY
Sbjct: 329 DRRGGQKVRFSAQNPPARSDNLGPIPQQPSAPPPPARPAQSTESNPY 375
>U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated
kinase family protein1, isoform c protein.
Length = 523
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 QLRRPKAVSDEPKVDTSKSKLSADAKEW--YPANYTSQALPAYNTEPAPYRPSRPSVQG- 424
Q + P+AV D K T + ++W Y N P+Y +P PY S G
Sbjct: 63 QQQNPQAVLDALKYYTQGE---SSGQKWLQYDMNDAPSRTPSYGLKPQPYSTSSLPYHGN 119
Query: 425 RLRQAQDQNP 454
+++ + NP
Sbjct: 120 KIQDPRKMNP 129
>U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated
kinase family protein1, isoform b protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 QLRRPKAVSDEPKVDTSKSKLSADAKEW--YPANYTSQALPAYNTEPAPYRPSRPSVQG- 424
Q + P+AV D K T + ++W Y N P+Y +P PY S G
Sbjct: 109 QQQNPQAVLDALKYYTQGE---SSGQKWLQYDMNDAPSRTPSYGLKPQPYSTSSLPYHGN 165
Query: 425 RLRQAQDQNP 454
+++ + NP
Sbjct: 166 KIQDPRKMNP 175
>D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase
protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 254 QLRRPKAVSDEPKVDTSKSKLSADAKEW--YPANYTSQALPAYNTEPAPYRPSRPSVQG- 424
Q + P+AV D K T + ++W Y N P+Y +P PY S G
Sbjct: 109 QQQNPQAVLDALKYYTQGE---SSGQKWLQYDMNDAPSRTPSYGLKPQPYSTSSLPYHGN 165
Query: 425 RLRQAQDQNP 454
+++ + NP
Sbjct: 166 KIQDPRKMNP 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,487
Number of Sequences: 27780
Number of extensions: 341599
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -