Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0879
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.27 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 356 SQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEE 490
           +QA P    +    +P +   Q + +Q Q + P   DD + ++EE
Sbjct: 826 AQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEE 870


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 575 VSNLPGSKVISHITVIKFAMFSLDPCFQLLQVN 477
           +  LP  K +S I  +K A   +D  FQ+L  N
Sbjct: 280 IPTLPSDK-LSKIQTLKLATRYIDFLFQVLHCN 311


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 279 QTNQRWILLNRSYQQM 326
           QTN+ W+ +N +Y+ +
Sbjct: 438 QTNKTWLPVNENYKSL 453


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 4/17 (23%), Positives = 14/17 (82%)
 Frame = -2

Query: 141 YNSINDFDRYIYFRRHV 91
           YN+ N++++ +Y++ ++
Sbjct: 94  YNNYNNYNKKLYYKNYI 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 300 LLNRSYQQMLKNGTLQITLLK 362
           L  R+Y ++L NGTL +  +K
Sbjct: 757 LRERAYTKILSNGTLLLQHVK 777


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 300 LLNRSYQQMLKNGTLQITLLK 362
           L  R+Y ++L NGTL +  +K
Sbjct: 753 LRERAYTKILSNGTLLLQHVK 773


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,018
Number of Sequences: 438
Number of extensions: 4254
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)