Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0879
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281...    33   0.12 
At4g28960.1 68417.m04137 hypothetical protein contains Pfam prof...    28   4.6  
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr...    28   4.6  
At5g01920.1 68418.m00111 protein kinase family protein contains ...    28   6.1  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   8.1  
At3g52270.1 68416.m05745 hypothetical protein                          27   8.1  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    27   8.1  

>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
           At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
           At3g43010, At2g10350; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 889

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 278 SDEPKVDTSKSKLSADAKEWYPANYTSQALPA-YNTEPAPYRPSRPSVQGRLRQAQDQNP 454
           S E  +   +  + ADA E  PA ++   LP  +N+E      +   V G+L+ + D+ P
Sbjct: 615 SVEKLLPLHQDHIIADASERVPATHSGLDLPKEHNSEELQTNANETDVYGKLQDSLDREP 674

Query: 455 YNLDDMSYSLEEA 493
            +  D+   +E++
Sbjct: 675 ASHSDIDLPIEQS 687


>At4g28960.1 68417.m04137 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 493

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 502 HVFSFFK*IRHVIQIVWILILSLTKSTLYRGARWSIWG---RFSVVSG*RLRSVICRV 338
           H+F   K   H+IQ +W+L++   K+ L R   + + G   R+S+     L  + CRV
Sbjct: 160 HIFHMPKEPNHMIQGMWMLMVRTAKTELARECWFVVNGVPIRYSIREHALLTGLNCRV 217


>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
           calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
          Length = 425

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +2

Query: 245 PGTQLRRPKAVSDEPK-VDTSKSKLSADAKEWYPANYTSQALP--AYNTEPAPYRPSRPS 415
           P  +  +P    D PK +  + +K   D  +     +T+  +P   YN E  P +   P+
Sbjct: 229 PDPEDTKPAGYDDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPA 288

Query: 416 VQGRLRQAQDQNPYNLDD 469
            +G+ +     NP   DD
Sbjct: 289 YKGKWKAPMIDNPEFKDD 306


>At5g01920.1 68418.m00111 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 495

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 345 AGYHSLASAD-NFDLEVSTFGSSETALGRRSCVPGCSFA 232
           A +HS ++A  +    +S+  SS + L RR C+  CSF+
Sbjct: 15  AAFHSCSTAGFSTPTHISSQNSSLSLLSRRGCMMRCSFS 53


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 177 IVKMNNGDISAPKGRGRGWQMNNQA 251
           ++  ++G I APK RGR  ++NN A
Sbjct: 186 LISSSHGGIPAPKKRGRKTKINNDA 210


>At3g52270.1 68416.m05745 hypothetical protein
          Length = 364

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 395 YRPSRPSVQGRLRQAQDQNPYNLDDMSYS--LEEAENMDLGRT*Q 523
           Y P + SV+G+++   D  P+N +  SY     E  N  +G+  Q
Sbjct: 211 YSPGKMSVEGKIKNKFDMRPHNENIESYGRLCRERTNKYMGKNRQ 255


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 221 RPGVANEQPGTQLR--RPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNT-EPA 391
           RP V   +P       RP   + EP   T+  + S  A E  P N  S  LP  NT +P+
Sbjct: 317 RPSVTAAEPMNSAAPPRPSVTAAEPMNSTAPPRPSVTAAEATPPN-LSAPLPHCNTPQPS 375

Query: 392 P 394
           P
Sbjct: 376 P 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,690
Number of Sequences: 28952
Number of extensions: 316846
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)