Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0878
         (277 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   0.26 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   3.2  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   3.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   5.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    19   7.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    19   7.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    19   9.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    19   9.7  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.26
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 153 EETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKI 263
           + +PEK + EKK +  PP    A      R S   ++
Sbjct: 68  KNSPEKESEEKKSKEKPPYSYNALIMMAIRNSPEKRL 104


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 154 RKRPKNLPGRKRMRPHRPR 210
           R+RP+    ++R  P RPR
Sbjct: 315 RERPRATDHQRRNEPKRPR 333


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 231  KYYGRAFPWAVGSHPFSPR*IFRAFPL 151
            K +G A  W +    FS R    +FPL
Sbjct: 957  KGFGGAVAWTIDLDDFSNRCCGGSFPL 983


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 113 EDPDRKWCY*NTARGNARKIYR 178
           ++PD KW   ++++   R  YR
Sbjct: 223 DEPDHKWKKNDSSKKKTRYYYR 244


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +2

Query: 35  RYSFRSTRPYHQND*EYGRRRDSSTGED 118
           ++ +RS   + +++ E GR   ++ G+D
Sbjct: 420 KFEYRSMNSWFEHETESGRNFGAAHGDD 447


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 196 PHRPRKCAPVVLTGFGGL 249
           P RP  C P    G+G +
Sbjct: 138 PVRPAACTPDSRVGYGSV 155


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 168 KSTGEKKDETPPPKEMRARSTY 233
           + TGE+ D+T   K  + R  +
Sbjct: 164 EGTGEEDDDTNGKKNQKKRGIF 185


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 168 KSTGEKKDETPPPKEMRARSTY 233
           + TGE+ D+T   K  + R  +
Sbjct: 320 EGTGEEDDDTNGKKNQKKRGIF 341


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 126 RSGSSPVLESRRR 88
           R  + P++E RRR
Sbjct: 35  RRSNKPIMEKRRR 47


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 150 QEETPEKSTGEKKDETP 200
           QE TP++   + +++TP
Sbjct: 5   QETTPKRDMLDSQEKTP 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,683
Number of Sequences: 336
Number of extensions: 1077
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4577651
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)