Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0878
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   1.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    24   3.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   4.6  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    24   4.6  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    23   8.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    23   8.0  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 141 ETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVK 260
           E P+EE  E+   E+ D+ P  +E+   S  + + +  VK
Sbjct: 217 EVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVK 256


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 147 PQEETPEKSTGEKKDETPPPKEMRARST 230
           P    P  ST  +  E+PPP  + + ST
Sbjct: 402 PTSNVPAYSTPARPTESPPPPPISSSST 429


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 EKKDETPPPKEMRARST 230
           E++DE PPP+  R  ST
Sbjct: 753 EEEDEGPPPQPARPEST 769


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 220 ARISLGGGVSSFFSPVDFSGVSSCGVSV 137
           A   L    SSF++  DF+ ++S GV+V
Sbjct: 84  AASQLAAHYSSFYTESDFATIASWGVNV 111


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 132 GATETPQEETPEKSTGEKKDETPPPKEMRARSTY 233
           G      EETP K    K+ + P  K++  R  Y
Sbjct: 27  GEKSKEYEETPRKVKIVKRKKQPARKQIETRPEY 60


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 216 AFPWAVGSHPFSPR*IFRAFPLAVFQ*HHFRSGSSP 109
           A PWA GSH +          L+ +Q H F   S+P
Sbjct: 288 ALPWAAGSHVY-----INIPSLSYWQVHPFTLASAP 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,907
Number of Sequences: 5004
Number of extensions: 17709
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)