Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0878
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0786 + 21510477-21511451,21512272-21512499 32 0.057
03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096 31 0.13
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551... 29 0.70
10_02_0004 - 4055613-4055903 27 2.8
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 27 2.8
08_02_1580 + 28002552-28002653,28002900-28002979,28003074-28003326 27 2.8
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 27 2.8
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 27 2.8
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 26 3.7
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 26 3.7
12_02_0628 + 21357876-21359921 26 5.0
11_06_0610 - 25449085-25453284 26 5.0
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 26 5.0
05_04_0131 + 18290201-18290650,18291474-18291626,18291950-182920... 26 5.0
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 26 5.0
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 25 6.5
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 25 6.5
07_03_0710 - 20873420-20874745 25 8.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 25 8.7
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 25 8.7
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 25 8.7
01_01_0635 - 4795434-4795461,4795897-4797365 25 8.7
>07_03_0786 + 21510477-21511451,21512272-21512499
Length = 400
Score = 32.3 bits (70), Expect = 0.057
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 148 RKRKRPKNLPGRKRMRPHRPRKCAPVVLTGFGGLQTLR 261
RK K + L G K +RP PR C P VL G Q+ R
Sbjct: 307 RKGKILQELRGPKNVRPTEPRGCLPAVLRRANGHQSRR 344
>03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096
Length = 456
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 175 PGRKRMRPHRPRKCAPVVLTGFGGLQTL 258
PG R+R + R C P L GFG L TL
Sbjct: 143 PGASRLRRLKLRNCLPPPLQGFGSLATL 170
>08_01_1072 +
10954080-10954851,10954956-10955027,10955108-10955191,
10955285-10955353,10955814-10955916,10956033-10956107,
10956204-10956366,10956502-10956571,10956649-10956735,
10956795-10956836,10956904-10956969,10957201-10957275,
10960149-10960271,10960683-10960966
Length = 694
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 132 GATETPQEETPEKSTGEKKDETPPPKEMRARSTYRFR 242
G E+PQEETP +S+ K + P + A + R R
Sbjct: 636 GDDESPQEETPARSSPAKAHDHEPAQGFGAAAPARHR 672
>10_02_0004 - 4055613-4055903
Length = 96
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 136 LLKHRKRKRPKNLPGRKRMRPHRPRKCAPVVL 231
LL HR R+RP P R+R+ H P+VL
Sbjct: 16 LLPHR-RQRPPTAPPRRRLLHHAVVDIHPIVL 46
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKEMRARS-TYRFRGSSNVKILKKP 275
+ P+E+ + E D+ PPP + R R SS +++ KP
Sbjct: 420 DIPEEDAVQIDEDEDDDDVPPPLTRKGGGRRKRGRASSKAQVVVKP 465
>08_02_1580 + 28002552-28002653,28002900-28002979,28003074-28003326
Length = 144
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETP 200
ATE P E+ P S GEKK P
Sbjct: 2 ATEQPSEKKPPASGGEKKAPLP 23
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 136 LLKHRKRKRPKNLPGRKRMRPHRPRKCAP 222
+L H+KR RP +++ RP + AP
Sbjct: 160 VLPHKKRGRPPGSGNKQQQRPQHKKAAAP 188
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 139 LKHRKRKRPKNLPGRKRMRPHRP 207
L+HR R RPK L K P+RP
Sbjct: 53 LRHRGRNRPKGLAFPKPNIPYRP 75
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 2 GSLVRASFAAERYSFRSTRPYH 67
G LVRAS AA +F RP+H
Sbjct: 21 GCLVRASLAAGHPTFALVRPHH 42
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPP 206
A+E P+++T EKK + PPP
Sbjct: 82 ASEPTAPPEPQRATEEKKGDEPPP 105
>12_02_0628 + 21357876-21359921
Length = 681
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 168 KSTGEKKDETPPPKEMRARSTYR 236
K+ ++D +PPP RARS+ R
Sbjct: 193 KADKSRRDSSPPPPPSRARSSAR 215
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPP 206
++P TPE S+ K+ PPP
Sbjct: 896 KSPPSHTPESSSPPSKESEPPP 917
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +3
Query: 189 DETPPPKEMRA---RSTYRFRGSSNVKI 263
DETPPP +MRA R Y F K+
Sbjct: 388 DETPPPLDMRAATPRKNYAFMTKEPEKV 415
>05_04_0131 +
18290201-18290650,18291474-18291626,18291950-18292042,
18292285-18292313,18292702-18292795,18292941-18293153
Length = 343
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPP 203
ET + T EK K DETPP
Sbjct: 98 ETSRSTTEEKKEENKPDETPP 118
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPKEMRARST 230
A + EE E+ EKK P +E RARS+
Sbjct: 29 AEKAAAEEEEEEEEEEKKPPKPARRERRARSS 60
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 139 LKHRKRK-RPKNLPGRKRMRPHRPRK 213
LK +KR+ R KNLP +KR R R+
Sbjct: 665 LKEKKRREREKNLPRKKRRRLEAERE 690
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 150 QEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
++ P K +K + PPPK++ + S+ S ++ +P
Sbjct: 50 EKVVPSKEEAKKVKKQPPPKKVESSSSEEDSSESEEEVKAQP 91
>07_03_0710 - 20873420-20874745
Length = 441
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 92 GVRT-LSHFDDRGGWI*TSSVR 30
GVR L+H DDRGG++ VR
Sbjct: 24 GVRLELTHADDRGGYVGAERVR 45
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPK----EMRARSTYRFRGSSNVKILKK 272
A++ + + E ST + E+PPPK + R ++ +G VK + K
Sbjct: 225 ASDVDSDSSMEPSTSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDK 274
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 159 TPEKSTGEKKDETPPPKEMRARSTYRFR 242
TP S + E+PPP ++R RS + FR
Sbjct: 62 TPPSSPPRRIPESPPPDDVR-RSLHLFR 88
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 159 TPEKSTGEKKDETPPPKEMRARSTYRFR 242
TP S + E+PPP ++R RS + FR
Sbjct: 62 TPPSSPPRRIPESPPPDDVR-RSLHLFR 88
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 83 YGRRRDSSTGEDPDR 127
YG RRDS G+D DR
Sbjct: 80 YGARRDSFRGDDRDR 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,916,943
Number of Sequences: 37544
Number of extensions: 132809
Number of successful extensions: 560
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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