Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0878
(277 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.44
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.58
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0) 28 1.3
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34) 27 1.8
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0) 27 1.8
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 27 2.3
SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98) 27 2.3
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 27 2.3
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0) 27 2.3
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 27 3.1
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 27 3.1
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 26 4.1
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 26 4.1
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 26 4.1
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 26 5.4
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27) 25 7.2
SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_53579| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 25 9.5
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 25 9.5
SB_42326| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00028) 25 9.5
SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3) 25 9.5
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_3668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKE 212
E TETP+EETP + T K+ TP KE
Sbjct: 28 ERQVTETPREETPNE-TEISKEGTPAEKE 55
>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 126 ENGATET-PQEE--TPEKSTGEKKDETPPPKEMRARST 230
ENGA E P E P+ ST KK PPPK + + T
Sbjct: 62 ENGAQEVIPLGERVVPKPSTKSKKPPIPPPKRLLQKET 99
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
+N ETP +T + + G E P K + + F + +V+ KP
Sbjct: 802 KNNGNETPSPDTKDNTEGTTSPEVPVRKPGHSYQNFPFSKAGSVEKPSKP 851
>SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)
Length = 374
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKE 212
E P++ETP + T E ETP P E
Sbjct: 334 EEPKQETPVEPTPEVPAETPKPDE 357
>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
Length = 946
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 139 LKHRKRKRPKNLPGRKRMRPHRPRKCA 219
+KH K++ + L +++ RP + RKC+
Sbjct: 385 IKHNKQQENEALSSKRQTRPSKERKCS 411
>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 803
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 129 NGATETPQEETPEKSTGEKKDETPPPKEMRARSTY 233
NG+ E P+E + GEKK +T ++ + R Y
Sbjct: 496 NGSLEAPEELQEKMVGGEKKGDTKLKEKRKQRKAY 530
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKK 272
EN TP TP S ++ +T P K R R GS+ ++ K
Sbjct: 257 ENSPRRTPPSFTPRSSISRRRSDT-PKKRRRISVPRRRAGSAQGRLTSK 304
>SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98)
Length = 809
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 129 NG-ATETPQEETPEKSTGEKKDETPPPKEMR 218
NG A E P+EE+ + T K+DE+ P + R
Sbjct: 566 NGKAVEKPREESIPQQTTSKRDESKTPSQHR 596
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
E ++E PE+ EKKD+T K+ + G K+ K P
Sbjct: 1584 EESKDENPEEKIEEKKDDTASEKKESSEEKMEVDGEEQ-KVEKSP 1627
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
E ++E PE+ EKKD+T K+ + G K+ K P
Sbjct: 163 EESKDENPEEKIEEKKDDTASEKKESSEEKMEVDGEEQ-KVEKSP 206
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 147 PQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
PQ E+P + G PPP+EM R+ G S++ +P
Sbjct: 2316 PQPESPLSTGGPAIAIIPPPEEMGQRTNSLDTGLSSLSSRSRP 2358
>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 490
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 35 RYSFRSTRPYHQND*EYGRRRDSSTGEDPD 124
++S TRPY + +YG S GE D
Sbjct: 151 KHSLHRTRPYQRESSDYGSGSTDSAGESMD 180
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 144 TPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
TPQ E + G+ K +TP ++ Y F G + KP
Sbjct: 74 TPQSEVSKNDNGDNKPDTPDEEDDEVCRKY-FEGLGSTPTKSKP 116
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 138 TETPQEET-----PEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
TE P ++T PE+ E+++E P PK +A+ T R + + KKP
Sbjct: 422 TERPTKKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIP-TKKP 471
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 142 KHRKRKRPKNLPGRKRMRPHRPRK 213
+HR ++ PK L + PHRP++
Sbjct: 215 QHRPQEPPKTLEPHRPQEPHRPQE 238
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 160 RPKNLPGRKRMRPHRPRKCAPVVLTGFGGLQT 255
R KNL R+ + +P +PVVL F L T
Sbjct: 132 RGKNLCERENLNDDQPSVTSPVVLNDFDALYT 163
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKE 212
+ G+TE P++++ E+S E ++ PK+
Sbjct: 1555 KEGSTEEPEDDSEEESEDETDEKADKPKK 1583
>SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 401
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 171 STGEKKDETPPPKEMRARSTYRFRGSSNVKILK 269
+TGE +ETPPP + Y F+ VK+ K
Sbjct: 3 ATGES-EETPPPAATSFQPGYAFKPPEPVKLAK 34
>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
+N A + + + PEK+ +KKD+ P++ A+ + GS KP
Sbjct: 157 KNDAKKKDKGDKPEKNYAKKKDKGDKPEKNYAKKKNKGSGSGGSGSGDKP 206
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 144 TPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNV 257
TP+ ET K +KK+E+ P K + + S N+
Sbjct: 948 TPKRETSSKKGRDKKNESAPSKTIFDMLSNALSNSENI 985
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPK 209
A E QEETP+++ G++ E P+
Sbjct: 1169 AAEPTQEETPQETPGDQSTEQGNPE 1193
>SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 145 HRKRKRPKNLPGRKRMRPHRPRKC 216
HR+ R + P R+R RP R R C
Sbjct: 10 HRRHSRRRRRP-RRRARPRRRRPC 32
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 144 TPQEETPEKSTGEKKDETPPPKEMRARS 227
TP +P + T K+D+TPP KE S
Sbjct: 1417 TPTSGSPARRT--KRDQTPPQKEAAVSS 1442
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 245 PPKPVSTTGAHFLGRW 198
PP P + G HF G+W
Sbjct: 293 PPWPTTPPGCHFHGKW 308
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 242 PKPVSTTGAHFLGRW 198
P+P +T G H+ G+W
Sbjct: 659 PEPTTTPGCHYHGKW 673
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 242 PKPVSTTGAHFLGRW 198
P+P +T G H+ G+W
Sbjct: 1024 PEPTTTPGCHYHGKW 1038
>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
Length = 471
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 LLKHRKRKRPKNLPGRKRMRPHRPRKCAPVVLTGF 240
LL +R+ K LP +K R +KC +TGF
Sbjct: 349 LLSFTERRLAKVLPRKKITRREAKKKCQDSNVTGF 383
>SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 148 RKRKRPKNLPGRKRMRPHRPRKCA 219
+KRK+ KN RKR R + RK A
Sbjct: 400 KKRKKKKNRKLRKRNRKRKQRKLA 423
>SB_53579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 181 RKRMRPHRPRKCAPVVLTGFG 243
+K HR RKC P V+ G G
Sbjct: 171 QKETLQHRARKCIPKVIDGCG 191
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 126 ENGATETPQEET---PEKSTGEKKDETPPPKEMRAR 224
+N E +E T P+KS EKK PP+ AR
Sbjct: 191 DNAVEEKHKESTTPSPKKSEREKKTSPTPPRPAPAR 226
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 142 KHRKRKRPKNLPGRKRMRPHRPRKCAPVVLTGFGGLQ 252
+ R+R+R + L RKR+ ++ R + V+ G LQ
Sbjct: 288 RERQRRRRERLGVRKRLASNQFRGASDAVIQGIKNLQ 324
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 138 TETPQEETPEKSTGEKKDETP 200
T TP+ TP+K+T KK P
Sbjct: 213 TTTPETTTPKKTTAAKKAPLP 233
>SB_42326| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00028)
Length = 577
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 217 RISLGGGVSSFFSPVDFSG 161
R+ +GG +S+ F+ +DF+G
Sbjct: 551 RLYVGGSISTSFNAIDFAG 569
>SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 193
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 148 RKRKRPKNLPGRKRMRP 198
+KR+ P+N GRK+ RP
Sbjct: 11 KKREMPRNFVGRKKDRP 27
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKE 212
ETP+EETP+ ++ E P +E
Sbjct: 234 ETPKEETPKVEDAPEEVEAPKEEE 257
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 147 PQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKK 272
P+ TP TG + P P RA S RG N KK
Sbjct: 221 PRTSTPRSRTGSRVRTPPTPVSSRAPSR-GARGIQNTMTTKK 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,463,075
Number of Sequences: 59808
Number of extensions: 146539
Number of successful extensions: 700
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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