Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0878
(277 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 31 0.11
At4g26630.1 68417.m03837 expressed protein 29 0.33
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 28 0.77
At1g61100.1 68414.m06883 disease resistance protein (TIR class),... 28 0.77
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 27 2.3
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr... 26 3.1
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 26 4.1
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 26 4.1
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 26 4.1
At1g22882.1 68414.m02857 expressed protein 26 4.1
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ... 26 4.1
At5g63550.1 68418.m07976 expressed protein 25 5.4
At5g49110.1 68418.m06079 expressed protein ; expression support... 25 5.4
At1g15270.1 68414.m01827 expressed protein ESTs gb|AA650895, gb|... 25 5.4
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 25 7.1
At5g27860.1 68418.m03342 expressed protein 25 7.1
At5g27610.1 68418.m03308 myb family transcription factor contain... 25 7.1
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 25 7.1
At1g68120.1 68414.m07781 expressed protein 25 7.1
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 25 9.4
At5g17280.1 68418.m02024 expressed protein similar to unknown pr... 25 9.4
At4g19060.1 68417.m02808 disease resistance protein-related cont... 25 9.4
At4g12020.1 68417.m01912 protein kinase family protein similar t... 25 9.4
At4g04210.1 68417.m00597 UBX domain-containing protein similar t... 25 9.4
At3g63300.1 68416.m07117 expressed protein 25 9.4
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 25 9.4
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 25 9.4
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c... 25 9.4
At2g24280.1 68415.m02901 serine carboxypeptidase S28 family prot... 25 9.4
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 25 9.4
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 25 9.4
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 31.1 bits (67), Expect = 0.11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKEMR 218
E+G ET +T EK G+KK+E P +E +
Sbjct: 165 EDGKKETEAAKTEEKKEGDKKEEEKPKEEAK 195
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGS 248
ENG + ++E P+ S E+KDE+ E +T + RGS
Sbjct: 550 ENGIPDKSEDEAPQPSESEEKDESEEHSE--EETTKKKRGS 588
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVK 260
E P+ ++ + T K++TP P+E +G NVK
Sbjct: 1388 EDPEMDSENEDTEVSKEDTPEPQEESMEPQKEVKGVKNVK 1427
>At1g61100.1 68414.m06883 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 808
Score = 28.3 bits (60), Expect = 0.77
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 144 TPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
T QE+ E +GEKK+ P+ ++++ R R + K KKP
Sbjct: 704 TAQEK--EDKSGEKKNNVKNPETRKSKTPSRTRAETMSKTAKKP 745
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 153 EETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
+ETP K T K++ E ++ + +G SN K KKP
Sbjct: 213 QETPVKETETKENGNAEKSETKSTNQKSGKGLSNSKEPKKP 253
>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 458
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 144 TPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILKK 272
TP E T E S + + PPP+ + A ST S V+ L +
Sbjct: 19 TPAEVTVESSFSQAEPPPPPPQVLVAGSTSNSNCSVEVEELSE 61
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPP 206
ENG P+E+ E +++D +P P
Sbjct: 533 ENGVASQPEEKQAENPNAKEEDNSPIP 559
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -2
Query: 240 ETGKYYGRAFPWAVGSHPFSP 178
+ YY R PW +G H P
Sbjct: 141 DRSSYYNRYIPWFIGDHQTRP 161
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 148 RKRKRPKNLPGRKRMRPHRPRK 213
RKR+R KNLP +KR + R+
Sbjct: 641 RKREREKNLPRKKRRKLEAARE 662
>At1g22882.1 68414.m02857 expressed protein
Length = 660
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 153 EETPEKSTGEKKDETPPPKEMRARSTYRFRGSSN 254
++ +KST +K++ PP+ M A++ SSN
Sbjct: 443 DDGADKSTHREKEKEAPPENMLAKTEASMAKSSN 476
>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
Pfam profile PF02847: MA3 domain; low similarity to
programmed cell death 4 protein [Gallus gallus]
GI:12958564
Length = 693
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 125 GRGLLRCWSRGGVRTLS 75
G +LRCW GG+ T S
Sbjct: 537 GERILRCWGGGGIETNS 553
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPKE 212
ATET E+TPE ++ K++ PKE
Sbjct: 2 ATETLDEKTPEVNSPAKEEIDVVPKE 27
>At5g49110.1 68418.m06079 expressed protein ; expression supported by
MPSS
Length = 1487
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPKEMRARS 227
ATE EE E+ GE++ PK+M +S
Sbjct: 1444 ATEEDDEEEQEQDEGEEESGDNRPKKMARKS 1474
>At1g15270.1 68414.m01827 expressed protein ESTs gb|AA650895,
gb|AA720043 and gb|R29777 come from this gene
Length = 64
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPKEMRARSTYR--FRGSSNVKILKK 272
A + +ET + +KKDE KE+RA+++ + F GS K KK
Sbjct: 17 ADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 192 ETPPPKEMRARSTYRFRGSSNVKI 263
++P P+ +R R Y GSS++++
Sbjct: 278 QSPSPERLRVRKNYNGNGSSSLRM 301
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +1
Query: 142 KHRKRKRPKNLPGRKRMRPHRPRK 213
+H+K ++PK ++R + HR ++
Sbjct: 83 RHKKHEKPKKAKDKERSKSHRHKR 106
>At5g27610.1 68418.m03308 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 969
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 133 VLLKHRKRKRPKNLPGRKRMRPHRPRKCAPV 225
V KH KRKRP+ LP R P A V
Sbjct: 129 VTRKHLKRKRPQVLPSDFREEVVPPHSVASV 159
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 135 ATETPQEETPEKST--GEKKDETPPP 206
A E P E+ EK GEKK PPP
Sbjct: 125 AVEKPGEKKEEKKKEEGEKKASPPPP 150
>At1g68120.1 68414.m07781 expressed protein
Length = 270
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 139 LKHRKRKRPKNLPGRKRMRPHRPRKCAPVVLTG 237
+K K+ + N+P +R R RKC +V+ G
Sbjct: 137 VKKEKKLKDNNMPRVQRERSPLLRKCIEMVING 169
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKDETPPPKE 212
ET EE E++ E DE+ PP E
Sbjct: 150 ETVVEEKTEETKAEGPDESKPPPE 173
>At5g17280.1 68418.m02024 expressed protein similar to unknown
protein (pir||T41692)
Length = 135
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 141 ETPQEETPEKSTGEKKD---ETPPPKE 212
E +EET +K T +KK+ PPP E
Sbjct: 71 EASKEETNKKETEDKKEVGVSVPPPPE 97
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 138 TETPQEETPEKSTGEKKDETPPPKEMRARSTY 233
TE +E++ + GE+++ET KE+ AR Y
Sbjct: 187 TEAEEEKSIKDEAGEREEETVKEKEL-ARLLY 217
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 135 ATETPQEETPEKSTGEKKDETPPPK 209
A++ ++ E S GEK ++ P PK
Sbjct: 581 ASDNEEDSNGETSEGEKDEDEPEPK 605
>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
XY40 protein [Rattus norvegicus] GI:2547025; contains
Pfam profile PF00789: UBX domain
Length = 303
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 101 SRGGVRTLSHFDDRGG 54
SRGG+RTLS + R G
Sbjct: 14 SRGGIRTLSDLNRRSG 29
>At3g63300.1 68416.m07117 expressed protein
Length = 498
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 162 PEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKIL 266
PE++ +K+E PP S + F S+ +++
Sbjct: 76 PEETLNPEKEECPPENSTSVSSQFSFAASATSQLV 110
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTGEKKDETPPPKEMRARSTYRFRGSSNVKILK 269
E PQ+ T K E+PPPK+ S ++KI K
Sbjct: 609 EKRGIHLPQKRAKSPITKGKSHESPPPKKRNTCSVSSQTRKVSLKISK 656
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 132 HFRSGSSPVLESRRRPYSQS 73
HF S SSP+L S P S S
Sbjct: 107 HFSSASSPLLSSSSAPASSS 126
>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 161
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +1
Query: 142 KHRKRKRPKNLPGRKRMRPHRPRKCA----PVVLTGF 240
K + K+P +P + P RP +C V LTGF
Sbjct: 78 KKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGF 114
>At2g24280.1 68415.m02901 serine carboxypeptidase S28 family protein
contains Pfam profile: PF05577 Serine carboxypeptidase
S28
Length = 494
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 140 SSTIFGRGLLRCWSRGGV 87
S+ IF G+ WSRGGV
Sbjct: 418 SNIIFSNGMQDPWSRGGV 435
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 126 ENGATETPQEETPEKSTG---EKKDETPPPKEMRARSTYRFRGSSNVKILKKP 275
EN E+ +E+ E S + + PPP++ +S + S+ I +KP
Sbjct: 201 ENNEAESDSKESLELSVRKIYQVLSQIPPPEKQAEKSQHEMWSGSDESISEKP 253
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +3
Query: 147 PQEETPEKSTGEKKDETPPPKE 212
PQ P + G+++D++ PP +
Sbjct: 1099 PQSAAPSPTDGDREDQSEPPSK 1120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,992,604
Number of Sequences: 28952
Number of extensions: 100243
Number of successful extensions: 438
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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