BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0877 (628 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 8e-38 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37 SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37 SB_56| Best HMM Match : Actin (HMM E-Value=0) 152 2e-37 SB_56628| Best HMM Match : Actin (HMM E-Value=0) 152 3e-37 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 8e-37 SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 133 1e-31 SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 3e-06 SB_54| Best HMM Match : Actin (HMM E-Value=0) 49 4e-06 SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 45 4e-05 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04 SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 32 0.44 SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 30 1.8 SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) 29 4.1 SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 153 bits (372), Expect = 8e-38 Identities = 70/73 (95%), Positives = 73/73 (100%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 TTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY Sbjct: 277 TTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 336 Query: 328 DESGPSIVHRKCF 290 DESGP+IVHRKCF Sbjct: 337 DESGPAIVHRKCF 349 Score = 80.2 bits (189), Expect = 1e-15 Identities = 35/39 (89%), Positives = 37/39 (94%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTV+SGG Sbjct: 238 PSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGG 276 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 152 bits (369), Expect = 2e-37 Identities = 70/73 (95%), Positives = 72/73 (98%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 TTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY Sbjct: 266 TTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 325 Query: 328 DESGPSIVHRKCF 290 DESGP+IVHRKCF Sbjct: 326 DESGPAIVHRKCF 338 Score = 81.4 bits (192), Expect = 5e-16 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 227 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 265 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 152 bits (369), Expect = 2e-37 Identities = 70/73 (95%), Positives = 72/73 (98%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 +TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY Sbjct: 304 STMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 363 Query: 328 DESGPSIVHRKCF 290 DESGPSIVHRKCF Sbjct: 364 DESGPSIVHRKCF 376 Score = 81.4 bits (192), Expect = 5e-16 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 265 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 152 bits (369), Expect = 2e-37 Identities = 70/73 (95%), Positives = 72/73 (98%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 +TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY Sbjct: 303 STMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362 Query: 328 DESGPSIVHRKCF 290 DESGPSIVHRKCF Sbjct: 363 DESGPSIVHRKCF 375 Score = 81.4 bits (192), Expect = 5e-16 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 264 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 152 bits (368), Expect = 3e-37 Identities = 70/73 (95%), Positives = 72/73 (98%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 +TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY Sbjct: 304 STMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 363 Query: 328 DESGPSIVHRKCF 290 DESGPSIVHRKCF Sbjct: 364 DESGPSIVHRKCF 376 Score = 81.4 bits (192), Expect = 5e-16 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 265 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 150 bits (364), Expect = 8e-37 Identities = 69/73 (94%), Positives = 72/73 (98%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 +TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY Sbjct: 303 STMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362 Query: 328 DESGPSIVHRKCF 290 DESGPSIVHRKCF Sbjct: 363 DESGPSIVHRKCF 375 Score = 81.4 bits (192), Expect = 5e-16 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 264 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302 >SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) Length = 149 Score = 133 bits (321), Expect = 1e-31 Identities = 59/73 (80%), Positives = 67/73 (91%) Frame = -1 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 +TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY Sbjct: 77 STMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEY 136 Query: 328 DESGPSIVHRKCF 290 E GP IVHRKCF Sbjct: 137 HEYGPPIVHRKCF 149 Score = 71.3 bits (167), Expect = 6e-13 Identities = 32/39 (82%), Positives = 33/39 (84%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P FLGMEA GIHE YN IMKCDVDIRKDLY+N VLSGG Sbjct: 38 PAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGG 76 >SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) Length = 543 Score = 49.2 bits (112), Expect = 3e-06 Identities = 23/60 (38%), Positives = 36/60 (60%) Frame = -1 Query: 457 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 278 + P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343 Score = 34.7 bits (76), Expect = 0.062 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 594 IHETTYNSIMKCDVDIRKDLYANTVLSGG 508 + E N I C +D+R+ LY N VLSGG Sbjct: 223 LSEVVDNVIQNCPIDVRRPLYKNIVLSGG 251 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 48.8 bits (111), Expect = 4e-06 Identities = 20/38 (52%), Positives = 27/38 (71%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 511 P LG + GIHE+ + SI KCD+D+R +L+ N VLSG Sbjct: 2309 PSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346 >SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) Length = 240 Score = 45.2 bits (102), Expect = 4e-05 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Frame = -1 Query: 541 GLVRQHRIVRWTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 371 GL + T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229 Query: 370 L 368 L Sbjct: 230 L 230 Score = 28.7 bits (61), Expect = 4.1 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = -2 Query: 612 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 G A G+ + S+ D+DIR L+ + +++GG Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGG 180 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 41.5 bits (93), Expect = 5e-04 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = -1 Query: 439 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 317 KI+I PP RK+ V++GG++LA + W++++EY+E G Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399 Score = 39.5 bits (88), Expect = 0.002 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -2 Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 P + +E G+ E +N+I D+D R + Y + VLSGG Sbjct: 268 PHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGG 306 >SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) Length = 367 Score = 31.9 bits (69), Expect = 0.44 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = -2 Query: 573 SIMKCDVDIRKDLYANTVLSGG 508 +I K D+D+R+ LY+N VLSGG Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGG 285 >SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 245 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Frame = -1 Query: 520 IVRWTTMYPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASL 368 ++ T M PG R+ +EI L S +K+ PP + W+GG+I SL Sbjct: 83 LIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSL 142 Query: 367 STFQQMWISKQEYDE 323 +++ Y + Sbjct: 143 EVLADRSTTRERYQQ 157 >SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) Length = 1066 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -2 Query: 363 PSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPGPAAQ 241 P N+ G++ R +L P++TGS + R +P P+A+ Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919 >SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 583 Score = 29.5 bits (63), Expect = 2.3 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = -2 Query: 336 RSTTSLAPPLYTGSASKRTARRCLQQPGPAAQFRL 232 ++T P++T S K+T R C++ P P + R+ Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52 >SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) Length = 1002 Score = 28.7 bits (61), Expect = 4.1 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -1 Query: 526 HRIVRWTTMYPGIADRMQKEI--TALAPSTMKIKIIAPPERKYSVWI 392 HRIVRW T+ +A + + T L P +I+II P Y V I Sbjct: 826 HRIVRWVTLALFVALVVLATVFATKLKPDEEQIEIIGPGTNWYDVRI 872 >SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 385 Score = 28.3 bits (60), Expect = 5.4 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = -3 Query: 428 HCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNAPRVAASSSP 255 HC+ +E L+ W + LP+ + V+R + L Q+VL P +S+SP Sbjct: 228 HCNFWDEKLKEGDWEPEEIASKLPSFLSFVRDVQRNFSLGDEQDVLERPPPRWSSNSP 285 >SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 28.3 bits (60), Expect = 5.4 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Frame = -2 Query: 396 GSVDRSSPPSLPSNRCGSRNRS----TTSLAPPLYTGSASKRTARRC 268 GS+ SP S P +R GSR R+ T+S A + +T ++C Sbjct: 338 GSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKC 384 >SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 499 Score = 27.9 bits (59), Expect = 7.1 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +2 Query: 443 CRWGESCDFLLHTVGDSRVHGGPPDN-TVLAYKSLRMSTSHFMMELYVVSWMPQASIPKK 619 CR+GE C F+ +T+ PD+ T + S+R T ++ W + PKK Sbjct: 119 CRFGEKCKFVHNTIPVGATSANEPDSETAAPHTSVR--TLRYIPNEEETQW--EEKKPKK 174 Query: 620 R 622 R Sbjct: 175 R 175 >SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 318 Score = 27.5 bits (58), Expect = 9.4 Identities = 11/37 (29%), Positives = 15/37 (40%) Frame = -2 Query: 366 LPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP 256 L C SR + P Y G RT ++C +P Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154 >SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3287 Score = 27.5 bits (58), Expect = 9.4 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = -2 Query: 387 DRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP 256 D +S P RC R S T P YTG+A C QP Sbjct: 744 DCASNPCAAYQRCIDRIDSYTCACPLGYTGNACDVNIDECASQP 787 >SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 583 Score = 27.5 bits (58), Expect = 9.4 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -2 Query: 408 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSAS 289 STP +V PP PSN + ++ S +P T S S Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,330,946 Number of Sequences: 59808 Number of extensions: 481544 Number of successful extensions: 1280 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1277 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1560464625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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