SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0877
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              153   8e-38
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             152   2e-37
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             152   2e-37
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         152   2e-37
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      152   3e-37
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              150   8e-37
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                133   1e-31
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 49   3e-06
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          49   4e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  45   4e-05
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)             32   0.44 
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      30   1.8  
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)                 29   4.1  
SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  153 bits (372), Expect = 8e-38
 Identities = 70/73 (95%), Positives = 73/73 (100%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           TTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 277 TTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 336

Query: 328 DESGPSIVHRKCF 290
           DESGP+IVHRKCF
Sbjct: 337 DESGPAIVHRKCF 349



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTV+SGG
Sbjct: 238 PSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGG 276


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  152 bits (369), Expect = 2e-37
 Identities = 70/73 (95%), Positives = 72/73 (98%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           TTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 266 TTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 325

Query: 328 DESGPSIVHRKCF 290
           DESGP+IVHRKCF
Sbjct: 326 DESGPAIVHRKCF 338



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 227 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 265


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  152 bits (369), Expect = 2e-37
 Identities = 70/73 (95%), Positives = 72/73 (98%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           +TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 304 STMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 363

Query: 328 DESGPSIVHRKCF 290
           DESGPSIVHRKCF
Sbjct: 364 DESGPSIVHRKCF 376



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 265 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  152 bits (369), Expect = 2e-37
 Identities = 70/73 (95%), Positives = 72/73 (98%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           +TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 STMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362

Query: 328 DESGPSIVHRKCF 290
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 264 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  152 bits (368), Expect = 3e-37
 Identities = 70/73 (95%), Positives = 72/73 (98%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           +TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 304 STMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 363

Query: 328 DESGPSIVHRKCF 290
           DESGPSIVHRKCF
Sbjct: 364 DESGPSIVHRKCF 376



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 265 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  150 bits (364), Expect = 8e-37
 Identities = 69/73 (94%), Positives = 72/73 (98%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           +TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 STMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362

Query: 328 DESGPSIVHRKCF 290
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 264 PSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/73 (80%), Positives = 67/73 (91%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
           +TM+PGIADRMQKEI  LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY
Sbjct: 77  STMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEY 136

Query: 328 DESGPSIVHRKCF 290
            E GP IVHRKCF
Sbjct: 137 HEYGPPIVHRKCF 149



 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 32/39 (82%), Positives = 33/39 (84%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGMEA GIHE  YN IMKCDVDIRKDLY+N VLSGG
Sbjct: 38  PAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGG 76


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/60 (38%), Positives = 36/60 (60%)
 Frame = -1

Query: 457 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 278
           + P  ++ ++I+   ++Y+VW GGS+LAS   F  +  +K +YDE GPSI     F  HR
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 594 IHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           + E   N I  C +D+R+ LY N VLSGG
Sbjct: 223 LSEVVDNVIQNCPIDVRRPLYKNIVLSGG 251


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = -2

Query: 624  PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 511
            P  LG +  GIHE+ + SI KCD+D+R +L+ N VLSG
Sbjct: 2309 PSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = -1

Query: 541 GLVRQHRIVRWTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 371
           GL     +    T+  G  +R+ +E+ +  P +M++K+I+     E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229

Query: 370 L 368
           L
Sbjct: 230 L 230



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 612 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           G  A G+ +    S+   D+DIR  L+ + +++GG
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGG 180


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -1

Query: 439 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 317
           KI+I  PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P  + +E  G+ E  +N+I   D+D R + Y + VLSGG
Sbjct: 268 PHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGG 306


>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
          Length = 367

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -2

Query: 573 SIMKCDVDIRKDLYANTVLSGG 508
           +I K D+D+R+ LY+N VLSGG
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGG 285


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
 Frame = -1

Query: 520 IVRWTTMYPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASL 368
           ++  T M PG   R+ +EI  L  S           +K+  PP     + W+GG+I  SL
Sbjct: 83  LIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSL 142

Query: 367 STFQQMWISKQEYDE 323
                   +++ Y +
Sbjct: 143 EVLADRSTTRERYQQ 157


>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 363  PSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPGPAAQ 241
            P N+ G++ R   +L  P++TGS  +    R   +P P+A+
Sbjct: 879  PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919


>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 336 RSTTSLAPPLYTGSASKRTARRCLQQPGPAAQFRL 232
           ++T     P++T S  K+T R C++ P P  + R+
Sbjct: 18  KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52


>SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)
          Length = 1002

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 526 HRIVRWTTMYPGIADRMQKEI--TALAPSTMKIKIIAPPERKYSVWI 392
           HRIVRW T+   +A  +   +  T L P   +I+II P    Y V I
Sbjct: 826 HRIVRWVTLALFVALVVLATVFATKLKPDEEQIEIIGPGTNWYDVRI 872


>SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 428 HCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNAPRVAASSSP 255
           HC+  +E L+   W    +   LP+ +     V+R + L   Q+VL   P   +S+SP
Sbjct: 228 HCNFWDEKLKEGDWEPEEIASKLPSFLSFVRDVQRNFSLGDEQDVLERPPPRWSSNSP 285


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 396 GSVDRSSPPSLPSNRCGSRNRS----TTSLAPPLYTGSASKRTARRC 268
           GS+   SP S P +R GSR R+    T+S A    +     +T ++C
Sbjct: 338 GSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKC 384


>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 443 CRWGESCDFLLHTVGDSRVHGGPPDN-TVLAYKSLRMSTSHFMMELYVVSWMPQASIPKK 619
           CR+GE C F+ +T+         PD+ T   + S+R  T  ++       W  +   PKK
Sbjct: 119 CRFGEKCKFVHNTIPVGATSANEPDSETAAPHTSVR--TLRYIPNEEETQW--EEKKPKK 174

Query: 620 R 622
           R
Sbjct: 175 R 175


>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -2

Query: 366 LPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP 256
           L    C SR +      P  Y G    RT ++C  +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 387 DRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP 256
           D +S P     RC  R  S T   P  YTG+A       C  QP
Sbjct: 744 DCASNPCAAYQRCIDRIDSYTCACPLGYTGNACDVNIDECASQP 787


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 408 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSAS 289
           STP  +V    PP  PSN   + ++   S +P   T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,330,946
Number of Sequences: 59808
Number of extensions: 481544
Number of successful extensions: 1280
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -