Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0877
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             118   6e-29
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  118 bits (283), Expect = 6e-29
 Identities = 55/56 (98%), Positives = 56/56 (100%)
 Frame = -1

Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 341
           TTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 78  TTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 86.2 bits (204), Expect = 2e-19
 Identities = 38/39 (97%), Positives = 38/39 (97%)
 Frame = -2

Query: 624 PRFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           P FLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 39  PSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 77


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 539 TCTPTPYCPVDHHVPWNRRP 480
           +C P PY  + + +   RRP
Sbjct: 194 SCCPEPYPDITYEIRLRRRP 213



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 509 DHHVPWNRRPYA 474
           DHH+ WN   +A
Sbjct: 64  DHHLKWNASEFA 75


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 511  WTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 401
            W T    I +    +I ALAPS      IA  + K++
Sbjct: 1251 WVTASTNIGEGEASKIVALAPSVRVPAKIASFDDKFT 1287


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 520 IVRWTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 371
           IV ++   PG  + M+++  AL  +     ++    RKY V     I A+
Sbjct: 389 IVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFAN 438


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 361 FQQMWISKQEYDESGPSIVHRK 296
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,021
Number of Sequences: 438
Number of extensions: 4485
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)