Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0876
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    57   3e-07
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.22 
UniRef50_Q1DRR1 Cluster: Putative uncharacterized protein; n=1; ...    32   8.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 56.8 bits (131), Expect = 3e-07
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 134 YLLLRWVDELTAHLMLSGYWSP*TSTKINAPP 229
           +LLLRWVDELTAHL+LSGYWSP     +NAPP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRHLYDVNAPP 185


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.22
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 319 AGWWYPPTRTHKRSYHQ 369
           A WWY P RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q1DRR1 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 419

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 468 GVHSLVHEKLRSPSIFITENGLHQFT 545
           G+ S+++E LR P +FIT   LH++T
Sbjct: 171 GISSMLNELLRDPKVFITPKILHEYT 196


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,372,548
Number of Sequences: 1657284
Number of extensions: 11009210
Number of successful extensions: 20030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20029
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)