Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0876
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.9  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   5.9  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 151 GGRAHGPPDVKWLLEPIDIYKNK 219
           GG  H P  V WLL P DIY  +
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGR 256


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 272 PHPSNRNALLLYGRNRQGGGTHP 340
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 148 MGGRAHGPPDVKWLLEP 198
           +GG  +G  D +W+LEP
Sbjct: 89  LGGSTNGEDDSEWILEP 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,149
Number of Sequences: 5004
Number of extensions: 46050
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)