Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0876
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         30   1.1  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    29   2.6  
04_04_0223 - 23723055-23723223,23723316-23723424,23723588-237236...    29   3.4  
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042...    28   4.5  
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584...    28   4.5  
04_04_0216 - 23691007-23691187,23691273-23691381,23691627-236917...    28   6.0  
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462...    27   7.9  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 275 HPSNRNALLLYGRNRQGGGTHPRGLTRGPTTSK 373
           H ++    LL GR R GGG H RGL   P  S+
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 462 PEGVHSLV---HEKLRSPSIFITENGLHQFTQMT 554
           P+G   LV    E   +P+I+ITENG+ +F   T
Sbjct: 353 PQGFRELVLYVKENYGNPTIYITENGVDEFNNKT 386


>04_04_0223 -
           23723055-23723223,23723316-23723424,23723588-23723690,
           23723781-23723812,23724024-23724241,23724322-23724437,
           23725055-23725310,23725719-23725806,23725928-23726005,
           23726199-23726274,23726525-23726583,23727715-23728066
          Length = 551

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 462 PEGVHSL---VHEKLRSPSIFITENGLHQFTQMT 554
           P+G   L   V E   +P+++ITENG+ +F   T
Sbjct: 435 PQGFRDLLLYVKENYGNPTVYITENGVDEFNNKT 468


>04_04_0219 -
           23703579-23703747,23703836-23703944,23704170-23704272,
           23704365-23704396,23704855-23705072,23706295-23706618,
           23706982-23707069,23707179-23707263
          Length = 375

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 462 PEGVHSL---VHEKLRSPSIFITENGLHQFTQMT 554
           PEG+  L   + E   +P+I+ITENG+ +    T
Sbjct: 259 PEGLRELLLHIKENYGNPTIYITENGVDEINNKT 292


>03_02_0139 -
           5844107-5844278,5844413-5844521,5844630-5844732,
           5844834-5844865,5845211-5845434,5845774-5845889,
           5845997-5846252,5846720-5846807,5846891-5846962,
           5847096-5847171,5847302-5847360,5848202-5848268,
           5848760-5848825,5850466-5850657
          Length = 543

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +3

Query: 462 PEGVHSL---VHEKLRSPSIFITENGL 533
           P G+ SL   V E+  SP ++ITENG+
Sbjct: 426 PRGMRSLMNYVKERYNSPPVYITENGM 452


>04_04_0216 -
           23691007-23691187,23691273-23691381,23691627-23691729,
           23691829-23691860,23692012-23692229,23692299-23692420
          Length = 254

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 462 PEGVHSL---VHEKLRSPSIFITENGLHQFTQMT 554
           P+G+  L   + E   +P+IFITENG+ +    T
Sbjct: 134 PQGLRELLLYIKENYGNPTIFITENGVDEVNNKT 167


>03_05_0833 -
           28045442-28045881,28045961-28046063,28046172-28046203,
           28046299-28046516,28046606-28046721,28047757-28048000,
           28048423-28048510,28048596-28048667,28048758-28048869,
           28049047-28049115,28049627-28049685,28050067-28050325
          Length = 603

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 468 GVHSLVHEKLRSPSIFITENGLHQFTQMT 554
           G  + + EK  +P+I I+ENG+ Q   +T
Sbjct: 438 GAVNYIKEKYNNPTIIISENGMDQSGNLT 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,860
Number of Sequences: 37544
Number of extensions: 309862
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)